Browse Element(s) Details


OsAffx.22921.1.S1_x_at

Description tigr:9629.m01841
TID=OsAffx.22921.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Peroxidase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1889011/11Peroxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18850Os.20756.1.S1_at11/111+10647062..10653535SBP domain containing protein, expressed
LOC_Os01g18860Os.16099.1.S1_at11/111+10654244..10656901S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os01g18870Os.54828.1.S1_at11/111+10661570..10663681Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18880Os.18542.1.S1_at11/111+10671954..10676557membrane associated salt-inducible protein, putative, expressed
LOC_Os01g18890OsAffx.22921.1.S1_x_at11/111+10676266..10678966Peroxidase family protein
LOC_Os01g18900NANA1+10683971..10684267stigma specific peroxidase precursor, putative
LOC_Os01g18910OsAffx.11103.1.S1_x_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18910OsAffx.11103.1.S1_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18920OsAffx.27789.3.S1_s_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.1.S1_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.2.S1_x_at6/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18930OsAffx.28306.1.S1_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18930OsAffx.28306.1.S1_x_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18940OsAffx.23301.1.S1_s_at11/111+10700561..10701978hypothetical protein
LOC_Os01g18940OsAffx.23301.2.S1_at11/111+10700561..10701978hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22921.1.S1_x_at--548--8611Chr01:10678485..10678509 (25 bp)
TGGTGGACCTTGACCCGGTGACGAA
LOC_Os01g18890
OsAffx.22921.1.S1_x_at--143--5831Chr01:10678480..10678504 (25 bp)
GACCTTGACCCGGTGACGAAGCTGG
LOC_Os01g18890
OsAffx.22921.1.S1_x_at--287--1811Chr01:10678473..10678497 (25 bp)
ACCCGGTGACGAAGCTGGTGCTCGA
LOC_Os01g18890
OsAffx.22921.1.S1_x_at--1148--1611Chr01:10678461..10678485 (25 bp)
AGCTGGTGCTCGACAACCAGTACTA
LOC_Os01g18890
OsAffx.22921.1.S1_x_at--936--6991Chr01:10678442..10678466 (25 bp)
GTACTACAAGAACATCCAGAGAGGG
LOC_Os01g18890
OsAffx.22921.1.S1_x_at--1135--6131Chr01:10678417..10678441 (25 bp)
GAGGTACTGTTCACGTCGGACGCCA
LOC_Os01g18890
OsAffx.22921.1.S1_x_at--695--8791Chr01:10678410..10678434 (25 bp)
TGTTCACGTCGGACGCCACGCTCGT
LOC_Os01g18890
OsAffx.22921.1.S1_x_at--65--1851Chr01:10678393..10678417 (25 bp)
ACGCTCGTCAGCCAGAGCGACACGG
LOC_Os01g18890
OsAffx.22921.1.S1_x_at--578--9411Chr01:10678362..10678386 (25 bp)
TCGTCGACCTGTACGCGCGGAACCG
LOC_Os01g18890
OsAffx.22921.1.S1_x_at--1153--3871Chr01:10678354..10678378 (25 bp)
CTGTACGCGCGGAACCGGAAGCTGT
LOC_Os01g18890
OsAffx.22921.1.S1_x_at--860--2611Chr01:10678342..10678366 (25 bp)
AACCGGAAGCTGTGGGCGTCGCGGT
LOC_Os01g18890
Target Sequence 
TGGTGGACCTTGACCCGGTGACGAAGCTGGTGCTCGACAACCAGTACTACAAGAACATCCAGAGAGGGGAGGTACTGTTC
ACGTCGGACGCCACGCTCGTCAGCCAGAGCGACACGGCGGCGCTCGTCGACCTGTACGCGCGGAACCGGAAGCTGTGGGC
GTCGCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22921.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis