Browse Element(s) Details


Os.20756.1.S1_at

Description gb:AK068471.1
DB_XREF= gi:32978489
TID=Os.20756.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20756 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013155F18, full insert sequence.
FL= gb:AK068471.1 gb:AK072849.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1885011/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18800Os.3663.1.S1_at11/111+10619601..10624330CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os01g18810OsAffx.23298.1.S1_at11/111+10625169..10627319hypothetical protein
LOC_Os01g18830OsAffx.10719.2.A1_at11/111+10638081..10639170hypothetical protein
LOC_Os01g18840OsAffx.11101.1.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.1.S1_s_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.2.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18850Os.20756.1.S1_at11/111+10647062..10653535SBP domain containing protein, expressed
LOC_Os01g18860Os.16099.1.S1_at11/111+10654244..10656901S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os01g18870Os.54828.1.S1_at11/111+10661570..10663681Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18880Os.18542.1.S1_at11/111+10671954..10676557membrane associated salt-inducible protein, putative, expressed
LOC_Os01g18890OsAffx.22921.1.S1_x_at11/111+10676266..10678966Peroxidase family protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20756.1.S1_at--1056--10491Chr01:10652940..10652964 (25 bp)
TTCACCGAAAAGCACGCGAGCCAAT
LOC_Os01g18850
Os.20756.1.S1_at--1132--5891Chr01:10653032..10653056 (25 bp)
GAGCTGCAGGCAGTGTCTCCCAGAA
LOC_Os01g18850
Os.20756.1.S1_at--157--2491Chr01:10653078..10653102 (25 bp)
AACAGGTTTCTGTCAACCAGGCCAG
LOC_Os01g18850
Os.20756.1.S1_at--865--6911Chr01:10653181..10653205 (25 bp)
GTATGAGAGGTCCTTTCCGCTGGAA
LOC_Os01g18850
Os.20756.1.S1_at--1157--4211Chr01:10653197..10653221 (25 bp)
CCGCTGGAATTCTTTGCGTTCAGGC
LOC_Os01g18850
Os.20756.1.S1_at--878--4631Chr01:10653212..10653236 (25 bp)
GCGTTCAGGCCCCAAGTGATATGGT
LOC_Os01g18850
Os.20756.1.S1_at--326--6591Chr01:10653238..10653262 (25 bp)
GATTGACTGCCAAGCATCTGCAAAT
LOC_Os01g18850
Os.20756.1.S1_at--717--6031Chr01:10653289..10653313 (25 bp)
GAGATGTTTTGCTTCGAGTCTGTAT
LOC_Os01g18850
Os.20756.1.S1_at--153--3151Chr01:10653409..10653433 (25 bp)
AATTCCATTGGACAGGCATCCTGAC
LOC_Os01g18850
Os.20756.1.S1_at--991--8571Chr01:10653460..10653484 (25 bp)
TGGTTTTACCGTGAGCAGAGCAGCT
LOC_Os01g18850
Os.20756.1.S1_at--703--2131Chr01:10653494..10653518 (25 bp)
ACAGTGCTTCCATGCTCTTTAATAA
LOC_Os01g18850
Target Sequence 
TTCACCGAAAAGCACGCGAGCCAATCGAAGACTACAGATCAAACCGCATTTGATGTGGAGAAGGGCCAACAGATCAGCAC
AAAGCCACCACTGAGCTGCAGGCAGTGTCTCCCAGAACTCGCTTACCGGCATCATTTGAACAGGTTTCTGTCAACCAGGC
CAGCAGTACTCTCCTTGGTCGCCATTGCTGCTGTCTGTGTCTGTGTAGGGTTGATCATGCAGGGGCCACCCCACATTGGA
GGTATGAGAGGTCCTTTCCGCTGGAATTCTTTGCGTTCAGGCCCCAAGTGATATGGTAGATTGACTGCCAAGCATCTGCA
AATACAGTTCAGCTGTATCATGCAGCATGGAGATGTTTTGCTTCGAGTCTGTATATTCTTGTAACATAGATTTATCTTTT
NACGGAATAACTATATTTGTTTACTACTTTACTGTACAACATTTAGAATTCGAAACTTGCATATCTAGAAATTCCATTGG
ACAGGCATCCTGACCTTGATAGAATGCAGTACTATCTGAATGGTTTTACCGTGAGCAGAGCAGCTGACAGAGTGACAGTG
CTTCCATGCTCTTTAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis