Browse Element(s) Details


OsAffx.11101.2.S1_at

Description tigr:9629.m01835
TID=OsAffx.11101.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1884011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18800Os.3663.1.S1_at11/111+10619601..10624330CBL-interacting serine/threonine-protein kinase 1, putative, expressed
LOC_Os01g18810OsAffx.23298.1.S1_at11/111+10625169..10627319hypothetical protein
LOC_Os01g18830OsAffx.10719.2.A1_at11/111+10638081..10639170hypothetical protein
LOC_Os01g18840OsAffx.11101.1.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.1.S1_s_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.2.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18850Os.20756.1.S1_at11/111+10647062..10653535SBP domain containing protein, expressed
LOC_Os01g18860Os.16099.1.S1_at11/111+10654244..10656901S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os01g18870Os.54828.1.S1_at11/111+10661570..10663681Helix-loop-helix DNA-binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11101.2.S1_at--336--6951Chr01:10640439..10640605 (25 bp)
GTAGCACTGAACAGCAGTATTTGTC
LOC_Os01g18840
OsAffx.11101.2.S1_at--34--10811Chr01:10640601..10640625 (25 bp)
TTGTCTTCCTACAAATTGGATATTC
LOC_Os01g18840
OsAffx.11101.2.S1_at--199--7951Chr01:10640618..10640642 (25 bp)
GGATATTCTTAGATCACAGATTTCA
LOC_Os01g18840
OsAffx.11101.2.S1_at--724--6451Chr01:10640629..10640653 (25 bp)
GATCACAGATTTCAGTGGCACAAGC
LOC_Os01g18840
OsAffx.11101.2.S1_at--436--10331Chr01:10640638..10640662 (25 bp)
TTTCAGTGGCACAAGCCACTGCAGA
LOC_Os01g18840
OsAffx.11101.2.S1_at--194--5431Chr01:10640661..10640685 (25 bp)
GAAGCCAGTGCAGAATCAGCCATGT
LOC_Os01g18840
OsAffx.11101.2.S1_at--906--3071Chr01:10640674..10640698 (25 bp)
AATCAGCCATGTTGGCACGGTTGCA
LOC_Os01g18840
OsAffx.11101.2.S1_at--204--731Chr01:10640682..10640706 (25 bp)
ATGTTGGCACGGTTGCAGTGCTTGT
LOC_Os01g18840
OsAffx.11101.2.S1_at--317--1931Chr01:10640690..10640714 (25 bp)
ACGGTTGCAGTGCTTGTCCCTGTCA
LOC_Os01g18840
OsAffx.11101.2.S1_at--997--10711Chr01:10640694..10640718 (25 bp)
TTGCAGTGCTTGTCCCTGTCAGGAG
LOC_Os01g18840
OsAffx.11101.2.S1_at--1008--3611Chr01:10640702..10640726 (25 bp)
CTTGTCCCTGTCAGGAGGGCATGAG
LOC_Os01g18840
Target Sequence 
GTAGCACTGAACAGCAGTATTTGTCTTCCTACAAATTGGATATTCTTAGATCACAGATTTCAGTGGCACAAGCCACTGCA
GAAGCCAGTGCAGAATCAGCCATGTTGGCACGGTTGCAGTGCTTGTCCCTGTCAGGAGGGCATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11101.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis