Browse Element(s) Details


Os.16099.1.S1_at

Description gb:CR286816
DB_XREF= gi:44673382
DB_XREF=CR286816
CLONE=y623d05p3
TID=Os.16099.1
CNT=18
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.16099 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1886011/11S-adenosylmethionine synthetase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18830OsAffx.10719.2.A1_at11/111+10638081..10639170hypothetical protein
LOC_Os01g18840OsAffx.11101.1.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.1.S1_s_at11/111+10640065..10641626expressed protein
LOC_Os01g18840OsAffx.11101.2.S1_at11/111+10640065..10641626expressed protein
LOC_Os01g18850Os.20756.1.S1_at11/111+10647062..10653535SBP domain containing protein, expressed
LOC_Os01g18860Os.16099.1.S1_at11/111+10654244..10656901S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os01g18870Os.54828.1.S1_at11/111+10661570..10663681Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18880Os.18542.1.S1_at11/111+10671954..10676557membrane associated salt-inducible protein, putative, expressed
LOC_Os01g18890OsAffx.22921.1.S1_x_at11/111+10676266..10678966Peroxidase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006555biological_processmethionine metabolism
GO:0006556biological_processS-adenosylmethionine biosynthesis
GO:0009693biological_processethylene biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0004478molecular_functionmethionine adenosyltransferase activity
GO:0008757molecular_functionS-adenosylmethionine-dependent methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16099.1.S1_at--362--3611Chr01:10654821..10654845 (25 bp)
CATTGTCCAGGTGTCGTATGCCATT
LOC_Os01g18860
Os.16099.1.S1_at--558--9411Chr01:10654778..10654802 (25 bp)
TCGGTGTTCGTCGACACTTACGGCA
LOC_Os01g18860
Os.16099.1.S1_at--257--1291Chr01:10654732..10654756 (25 bp)
AGATCCTCAGGATTGTCACGGAGAA
LOC_Os01g18860
Os.16099.1.S1_at--642--8511Chr01:10654656..10654680 (25 bp)
TGGCAATGGCCGCTACCTGAAGACG
LOC_Os01g18860
Os.16099.1.S1_at--32--6131Chr01:10654611..10654635 (25 bp)
GAGGGAGGACCCTGACTTCACCTGG
LOC_Os01g18860
Os.16099.1.S1_at--495--7651Chr01:10654564..10654588 (25 bp)
GGGAGGAGCCTTCTGCATAAACAAA
LOC_Os01g18860
Os.16099.1.S1_at--622--10731Chr01:10654536..10654560 (25 bp)
TTGCAGCCTCTAAAACTGTTTTGGA
LOC_Os01g18860
Os.16099.1.S1_at--440--10371Chr01:10654486..10654510 (25 bp)
TTTTTATCTACACTTCAGCCTCTGA
LOC_Os01g18860
Os.16099.1.S1_at--614--2111Chr01:10654442..10654466 (25 bp)
ACATGTATCTATTTTCACTGCCTTA
LOC_Os01g18860
Os.16099.1.S1_at--136--5551Chr01:10654320..10654344 (25 bp)
GAAACTGAAGCCTCTCATTGGTCCT
LOC_Os01g18860
Os.16099.1.S1_at--547--31Chr01:10654304..10654328 (25 bp)
ATTGGTCCTTGTCTTGTGCGCAGTG
LOC_Os01g18860
Target Sequence 
CATTGTCCAGGTGTCGTATGCCATTNGGCGTGCCGGAACCGCTNTCGGTGTTCGTCGACACTTACGGCACGGGCAAGATC
CCTGACAGGGAGATCCTCAGGATTGTCACGGAGAACTTCGATTTCAGGCCAGGCATGATCATCATCAACCTCGACCTGAT
GAGGGGTGGCAATGGCCGCTACCTGAAGACGGCGGCTTACGGGCACTTCGGGAGGGAGGACCCTGACTTCACCTGGGAGG
TGGTGAAACCCCTCAAGTGGGAGGAGCCTTCTGCATAAACAAACACTTGCAGCCTCTAAAACTGTTTTGGAAATGTTTCC
ATTGATTTTGGAGATGTTTTTATCTACACTTCAGCCTCTGAACTTAATCAGACCGTCACTACATGTATCTATTTTCACTG
CCTTAGTAGCAGGCAGGTATGTTTAAGGTCTTATGCTTAGTGTTCTTGTGTTAAAGAAGCTTGTGTGGTGAGTGGTGAGG
GGATGATGAAACTATAAAGAAACTGAAGCCTCTCATTGGTCCTTGTCTTGTGCGCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16099.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis