Browse Element(s) Details


Os.18542.1.S1_at

Description gb:AU030398
DB_XREF= gi:3763646
DB_XREF=AU030398
CLONE=E51008_4Z
TID=Os.18542.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1888011/11membrane associated salt-inducible protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18850Os.20756.1.S1_at11/111+10647062..10653535SBP domain containing protein, expressed
LOC_Os01g18860Os.16099.1.S1_at11/111+10654244..10656901S-adenosylmethionine synthetase 1, putative, expressed
LOC_Os01g18870Os.54828.1.S1_at11/111+10661570..10663681Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g18880Os.18542.1.S1_at11/111+10671954..10676557membrane associated salt-inducible protein, putative, expressed
LOC_Os01g18890OsAffx.22921.1.S1_x_at11/111+10676266..10678966Peroxidase family protein
LOC_Os01g18900NANA1+10683971..10684267stigma specific peroxidase precursor, putative
LOC_Os01g18910OsAffx.11103.1.S1_x_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18910OsAffx.11103.1.S1_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18920OsAffx.27789.3.S1_s_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.1.S1_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.2.S1_x_at6/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18930OsAffx.28306.1.S1_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18930OsAffx.28306.1.S1_x_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18940OsAffx.23301.1.S1_s_at11/111+10700561..10701978hypothetical protein
LOC_Os01g18940OsAffx.23301.2.S1_at11/111+10700561..10701978hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18542.1.S1_at--452--1231Chr01:10672846..10672870 (25 bp)
AGTTCTGTGATGAGTTTAGGCTGTC
LOC_Os01g18880
Os.18542.1.S1_at--39--9151Chr01:10672874..10672898 (25 bp)
TGCGTTTGCTAATGCGTTCACGAGA
LOC_Os01g18880
Os.18542.1.S1_at--1158--3731Chr01:10672882..10672906 (25 bp)
CTAATGCGTTCACGAGACATCCGGG
LOC_Os01g18880
Os.18542.1.S1_at--1029--6511Chr01:10672907..10672931 (25 bp)
GATATTCTATGTGTCGTTGAAGGGT
LOC_Os01g18880
Os.18542.1.S1_at--1089--8991Chr01:10673008..10673032 (25 bp)
TGAAGGAGAGGTTTGTGGCAATCAT
LOC_Os01g18880
Os.18542.1.S1_at--418--3291Chr01:10673123..10673147 (25 bp)
CAAAGTTGGCACAGGTATTGAGGAT
LOC_Os01g18880
Os.18542.1.S1_at--5--6231Chr01:10673205..10673229 (25 bp)
GAGGCCCTGTGAGTTGTGCATATGA
LOC_Os01g18880
Os.18542.1.S1_at--457--271Chr01:10673224..10673248 (25 bp)
ATATGATTTCTGTTGCGCTTCTATG
LOC_Os01g18880
Os.18542.1.S1_at--712--5551Chr01:10673523..10673547 (25 bp)
GAAATGGAATCGCAGCATTTGTTTT
LOC_Os01g18880
Os.18542.1.S1_at--936--10231Chr01:10673545..10673569 (25 bp)
TTTGGAACCTCTAAACAGTCTGTCA
LOC_Os01g18880
Os.18542.1.S1_at--109--3891Chr01:10673564..10673588 (25 bp)
CTGTCAAGACTTGAGGATATTCTTT
LOC_Os01g18880
Target Sequence 
AGTTCTGTGATGAGTTTAGGCTGTCAANTGCGTTTGCTAATGCGTTCACGAGACATCCGGGGATATTCTATGTGTCGTTG
AAGGGTGGGATCAAGACGGCGGTGTTGAGGGAAGCATATGATGAGAATGGCGAGCTTGTTGATAAGGATCCAATGATTGA
GCTGAAGGAGAGGTTTGTGGCAATCATGGATGAGGGGCATANAGAGTATTTGGAGGAGTTGAGGAAGAAGAGGGAAGAGT
TGGAGAAACAGAGACTGCAGGAGGCTTATAGGGGTGCCAAAGTTGGCACAGGTATTGAGGATGAGATGGAGGAGGAAGGC
ANTGATGAGTCAGATGAAGATGATGATTCAGAAGAAGGAGAGGCCCTGTGAGTTGTGCATATGATTTCTGTTGCGCTTCT
ATGGTTNGTATGACCTGGGGAGCNGTGGCCAAGTTGACTCGATCTGGGGTTGGAAATGGAATCGCAGCATTTGTTTTGGA
ACCTCTAAACAGTCTGTCAAGACTTGAGGATATTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18542.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis