Browse Element(s) Details


OsAffx.23301.1.S1_s_at

Description gb:NM_183634.1
DB_XREF= gi:34894395
GEN=P0702D12.5
TID=OsAffx.23301.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0702D12.5 (P0702D12.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1894011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18880Os.18542.1.S1_at11/111+10671954..10676557membrane associated salt-inducible protein, putative, expressed
LOC_Os01g18890OsAffx.22921.1.S1_x_at11/111+10676266..10678966Peroxidase family protein
LOC_Os01g18900NANA1+10683971..10684267stigma specific peroxidase precursor, putative
LOC_Os01g18910OsAffx.11103.1.S1_x_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18910OsAffx.11103.1.S1_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18920OsAffx.27789.3.S1_s_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.1.S1_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.2.S1_x_at6/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18930OsAffx.28306.1.S1_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18930OsAffx.28306.1.S1_x_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18940OsAffx.23301.1.S1_s_at11/111+10700561..10701978hypothetical protein
LOC_Os01g18940OsAffx.23301.2.S1_at11/111+10700561..10701978hypothetical protein
LOC_Os01g18950OsAffx.22919.2.S1_x_at11/111+10709917..10711049Peroxidase family protein
LOC_Os01g18950OsAffx.22919.1.S1_x_at5/111+10709917..10711049Peroxidase family protein
LOC_Os01g18960OsAffx.2035.1.S1_at11/111+10712534..10713258hypothetical protein
LOC_Os01g18970OsAffx.22919.1.S1_x_at11/111+10717197..10718401Peroxidase family protein
LOC_Os01g18970OsAffx.22919.2.S1_x_at4/111+10717197..10718401Peroxidase family protein
LOC_Os01g18980NANA1+10721000..10721317transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23301.1.S1_s_at--1063--5331Chr01:10701913..10701937 (25 bp)
GAAGATGGCGGCAGCACCTAACTTC
LOC_Os01g18940
OsAffx.23301.1.S1_s_at--993--6211Chr01:10701910..10701934 (25 bp)
GATGGCGGCAGCACCTAACTTCGTT
LOC_Os01g18940
OsAffx.23301.1.S1_s_at--606--8351Chr01:10701907..10701931 (25 bp)
GGCGGCAGCACCTAACTTCGTTGTT
LOC_Os01g18940
OsAffx.23301.1.S1_s_at--815--8231Chr01:10701904..10701928 (25 bp)
GGCAGCACCTAACTTCGTTGTTGGC
LOC_Os01g18940
OsAffx.23301.1.S1_s_at--833--1491Chr01:10701901..10701925 (25 bp)
AGCACCTAACTTCGTTGTTGGCGTC
LOC_Os01g18940
OsAffx.23301.1.S1_s_at--601--4111Chr01:10701897..10701921 (25 bp)
CCTAACTTCGTTGTTGGCGTCGGAG
LOC_Os01g18940
OsAffx.23301.1.S1_s_at--761--9811Chr01:10701895..10701919 (25 bp)
TAACTTCGTTGTTGGCGTCGGAGGA
LOC_Os01g18940
OsAffx.23301.1.S1_s_at--697--2791Chr01:10701871..10701895 (25 bp)
AAGAGGAGGCCAGATCTGCCGTCAA
LOC_Os01g18940
OsAffx.23301.1.S1_s_at--256--991Chr01:10701868..10701892 (25 bp)
AGGAGGCCAGATCTGCCGTCAAGCC
LOC_Os01g18940
OsAffx.23301.1.S1_s_at--1055--4571Chr01:10701625..10701649 (25 bp)
GCGCTCGCCGTTTTTTCGCGGGTGC
LOC_Os01g18940
OsAffx.23301.1.S1_s_at--1060--3791Chr01:10701622..10701646 (25 bp)
CTCGCCGTTTTTTCGCGGGTGCTGG
LOC_Os01g18940
Target Sequence 
GAAGATGGCGGCAGCACCTAACTTCGTTGTTGGCGTCGGAGGAAGAGGAGGCCAGATCTGCCGTCAAGCCCCCGCACGCC
TTCCACCGCCGAGCTCCCGTGCGTCGTCCCCCGTCGAGCTCCCGCGCATCGTCCCCTACCGCCCGGCGCCGTCCCAGATC
GACTGCCGCCGACTCGTTCGCCGTCAAGCTCGTCCGCCACCGAGCCCTCCGCCGTCGAGCTCCTCCGCCGTCGAGCCCTC
CGCCGCCGAGTCCTCCGCCGTCGAATCCTTCGCCGCTTCCGCGGGCCGGCGCTCGCCGTTTTTTCGCGGGTGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23301.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis