Browse Element(s) Details


OsAffx.2035.1.S1_at

Description tigr:9629.m01848
TID=OsAffx.2035.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1896011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g18910OsAffx.11103.1.S1_x_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18910OsAffx.11103.1.S1_at11/111+10688176..10689272Peroxidase family protein
LOC_Os01g18920OsAffx.27789.3.S1_s_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.1.S1_at11/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18920OsAffx.27789.2.S1_x_at6/111+10690105..10692692hAT family dimerisation domain containing protein
LOC_Os01g18930OsAffx.28306.1.S1_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18930OsAffx.28306.1.S1_x_at11/111+10698404..10699908Peroxidase family protein
LOC_Os01g18940OsAffx.23301.1.S1_s_at11/111+10700561..10701978hypothetical protein
LOC_Os01g18940OsAffx.23301.2.S1_at11/111+10700561..10701978hypothetical protein
LOC_Os01g18950OsAffx.22919.2.S1_x_at11/111+10709917..10711049Peroxidase family protein
LOC_Os01g18950OsAffx.22919.1.S1_x_at5/111+10709917..10711049Peroxidase family protein
LOC_Os01g18960OsAffx.2035.1.S1_at11/111+10712534..10713258hypothetical protein
LOC_Os01g18970OsAffx.22919.1.S1_x_at11/111+10717197..10718401Peroxidase family protein
LOC_Os01g18970OsAffx.22919.2.S1_x_at4/111+10717197..10718401Peroxidase family protein
LOC_Os01g18980NANA1+10721000..10721317transposon protein, putative, unclassified
LOC_Os01g18990NANA1+10729390..10731345retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g19000NANA1+10731755..10736110retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g19010Os.46314.2.S1_x_at4/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19010OsAffx.25095.3.S1_x_at1/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19010OsAffx.32036.1.S1_at1/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19010Os.47114.1.S1_x_at1/111+10738118..10740255transposon protein, putative, unclassified
LOC_Os01g19010OsAffx.25095.5.S1_x_at1/111+10738118..10740255transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2035.1.S1_at--575--8951Chr01:10712586..10712610 (25 bp)
TGACATTGAGGTTCGCTACCGGTGT
LOC_Os01g18960
OsAffx.2035.1.S1_at--1020--5751Chr01:10712612..10712636 (25 bp)
GACGTGCCGTCATGGAAGCAGGAAC
LOC_Os01g18960
OsAffx.2035.1.S1_at--42--1971Chr01:10712635..10712659 (25 bp)
ACTGTGGTTCTGTTCGATTGACTTG
LOC_Os01g18960
OsAffx.2035.1.S1_at--800--6591Chr01:10712650..10712674 (25 bp)
GATTGACTTGCTCTACTACATGTAC
LOC_Os01g18960
OsAffx.2035.1.S1_at--1117--1971Chr01:10712673..10712697 (25 bp)
ACTCCATAACAGACTATTTCCACAC
LOC_Os01g18960
OsAffx.2035.1.S1_at--96--5491Chr01:10712987..10713011 (25 bp)
GAACTTGTTTCACATCCATACACAC
LOC_Os01g18960
OsAffx.2035.1.S1_at--330--7951Chr01:10713018..10713042 (25 bp)
GGATATACATTCATACACCAACTTG
LOC_Os01g18960
OsAffx.2035.1.S1_at--163--10751Chr01:10713040..10713064 (25 bp)
TTGCACATTATACCATTCCCATCTT
LOC_Os01g18960
OsAffx.2035.1.S1_at--1055--431Chr01:10713060..10713084 (25 bp)
ATCTTCATCGATTGGCACATCACAC
LOC_Os01g18960
OsAffx.2035.1.S1_at--613--3371Chr01:10713088..10713112 (25 bp)
CACCATCTTCATCAATCTACCAAGA
LOC_Os01g18960
OsAffx.2035.1.S1_at--456--7611Chr01:10713145..10713169 (25 bp)
GGGAAGATCGACGTTAGCCTCCTGT
LOC_Os01g18960
Target Sequence 
TGACATTGAGGTTCGCTACCGGTGTGGACGTGCCGTCATGGAAGCAGGAACTGTGGTTCTGTTCGATTGACTTGCTCTAC
TACATGTACTCCATAACAGACTATTTCCACACAAGAAGATTAAGAACTTGTTTCACATCCATACACACAAAAATGGATAT
ACATTCATACACCAACTTGCACATTATACCATTCCCATCTTCATCGATTGGCACATCACACCATCACCATCTTCATCAAT
CTACCAAGAACACCAAAAACTTACAAGGCCAAATGGAGATGGGGAAGATCGACGTTAGCCTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis