Browse Element(s) Details


OsAffx.27789.2.S1_x_at

Description tigr:9635.m02449
TID=OsAffx.27789.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2555010/11hypothetical protein
LOC_Os09g145307/11hAT family dimerisation domain containing protein
LOC_Os01g189206/11hAT family dimerisation domain containing protein
LOC_Os08g348306/11transposase, putative
LOC_Os12g089605/11hAT dimerisation domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25540OsAffx.5436.1.S1_at11/117+14617050..14618807expressed protein
LOC_Os07g25550OsAffx.27789.3.S1_s_at11/117+14639926..14644366hypothetical protein
LOC_Os07g25550OsAffx.27789.2.S1_x_at10/117+14639926..14644366hypothetical protein
LOC_Os07g25550OsAffx.27789.1.S1_at1/117+14639926..14644366hypothetical protein
LOC_Os07g25560Os.27639.1.S1_x_at2/117+14650824..14654074retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g25570OsAffx.28581.1.S1_at10/117+14656853..14659257hypothetical protein
LOC_Os07g25570OsAffx.21066.1.S1_x_at2/117+14656853..14659257hypothetical protein
LOC_Os07g25580NANA7+14662211..14662519hypothetical protein
LOC_Os07g25590Os.49621.1.S1_at11/117+14666320..14675013Tyrosine decarboxylase 1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27789.2.S1_x_at--998--8034Chr07:14642794..14642818 (25 bp)
GGAGAGGTTTCTTGGTCTTCAACAT
LOC_Os07g25550
OsAffx.27789.2.S1_x_at--680--10771Chr07:14642820..14642844 (25 bp)
TTGAGAGATGTACAGCTATTGCTTT
LOC_Os07g25550
OsAffx.27789.2.S1_x_at--639--5391NONE
GAAGCTTTATGTGGCATGTTGAGCA
NONE
OsAffx.27789.2.S1_x_at--131--1315Chr12:4684968..4684992 (25 bp)
AGATGACTTGTCACGTGCTTTGCAA
LOC_Os12g08960
OsAffx.27789.2.S1_x_at--90--7375Chr12:4685038..4685057 (20 bp)
GTGAAAGAGCTCTTGCAGGACATGA
LOC_Os12g08960
OsAffx.27789.2.S1_x_at--756--6132Chr07:14643621..14643645 (25 bp)
GAGGGACATCTACACGTCGAAGGCA
LOC_Os07g25550
OsAffx.27789.2.S1_x_at--1116--8892Chr12:4685205..4685229 (25 bp)
TGAGATCTATCTTGCAGCCATCGAT
LOC_Os12g08960
OsAffx.27789.2.S1_x_at--368--1692Chr12:4685220..4685244 (25 bp)
AGCCATCGATGCCATTTTGGTTGAA
LOC_Os12g08960
OsAffx.27789.2.S1_x_at--1091--636Chr12:4685286..4685308 (23 bp)
ATGCATGTCATCTCTTAATCCACGG
LOC_Os12g08960
OsAffx.27789.2.S1_x_at--1047--10495Chr07:14643771..14643795 (25 bp)
TTAATCCACGGAATTCCTTCTCCAA
LOC_Os07g25550
OsAffx.27789.2.S1_x_at--399--6215Chr07:14643817..14643841 (25 bp)
GAGGCTTGCTGAAATTTATGCTGAA
LOC_Os07g25550
Target Sequence 
GGAGAGGTTTCTTGGTCTTCAACATATTGAGAGATGTACAGCTATTGCTTTGAAGGAAGCTTTATGTGGCATGTTGAGCA
TTACAGATGACTTGTCACGTGCTTTGCAAAGAAAGGACCAAGATATTGTTGAGGCAATGAGTTTGCTCATAGATGTGAAA
GAGCTCTTGCAGGACATGAGGGAGAATGGATGGAAGCCACTATTGAATAGGGTGATTTCATTCTGTAATAAACATGAGAT
TAAAGTGCCAAAAATGGACAAGGAAGTTAATGAAAGAGGGACATCTACACGTCGAAGGCACAATGTAACAAATAAGCATT
ACTATCATGTTGAGATCTATCTTGCAGCCATCGATGCCATTTTGGTTGAAATGAACCATCACTTTAGTGAAGTTAGTTCA
GAGTTATTAGTATGCATGTCATCTCTTAATCCACGGAATTCCTTCTCCAACTTTGATGTGGATAAGCTTGTGAGGCTTGC
TGAAATTTATGCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27789.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis