Browse Element(s) Details


OsAffx.28581.1.S1_at

Description tigr:9635.m02451
TID=OsAffx.28581.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2557010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25550OsAffx.27789.3.S1_s_at11/117+14639926..14644366hypothetical protein
LOC_Os07g25550OsAffx.27789.2.S1_x_at10/117+14639926..14644366hypothetical protein
LOC_Os07g25550OsAffx.27789.1.S1_at1/117+14639926..14644366hypothetical protein
LOC_Os07g25560Os.27639.1.S1_x_at2/117+14650824..14654074retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g25570OsAffx.28581.1.S1_at10/117+14656853..14659257hypothetical protein
LOC_Os07g25570OsAffx.21066.1.S1_x_at2/117+14656853..14659257hypothetical protein
LOC_Os07g25580NANA7+14662211..14662519hypothetical protein
LOC_Os07g25590Os.49621.1.S1_at11/117+14666320..14675013Tyrosine decarboxylase 1, putative, expressed
LOC_Os07g25600OsAffx.28583.1.S1_at11/117+14675821..14676258hypothetical protein
LOC_Os07g25610OsAffx.16407.2.S1_x_at1/117+14678204..14678829hypothetical protein
LOC_Os07g25620NANA7+14681982..14686254retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28581.1.S1_at--767--871Chr07:14656944..14656968 (25 bp)
ATGGCGCGCGCTCGAGCTTTGCAAT
LOC_Os07g25570
OsAffx.28581.1.S1_at--505--9073Chr08:10642157..10642181 (25 bp)
TGCTTCTCTCGTTGACGCGGTGGAG
NONE
OsAffx.28581.1.S1_at--1094--1891Chr07:14657061..14657085 (25 bp)
ACGTCCACCGGCGAACTCAGAGAAA
LOC_Os07g25570
OsAffx.28581.1.S1_at--766--8531NONE
TGGAGACGCCCGATGGAAAGCCTGC
NONE
OsAffx.28581.1.S1_at--798--7611Chr07:14658523..14658547 (25 bp)
GGGACATCCCCTATGAGTCCAAGGA
LOC_Os07g25570
OsAffx.28581.1.S1_at--260--4151Chr07:14658579..14658603 (25 bp)
CGCGTGGTTTTCAAGGCTGGTTTCG
LOC_Os07g25570
OsAffx.28581.1.S1_at--588--6411Chr07:14658608..14658632 (25 bp)
GATCTGCTCGGGAGGCATACTGGAT
LOC_Os07g25570
OsAffx.28581.1.S1_at--577--5531Chr07:14659072..14659096 (25 bp)
GAAACGGTTTTCAGCAAGCACCCTT
LOC_Os07g25570
OsAffx.28581.1.S1_at--615--3391Chr07:14659083..14659107 (25 bp)
CAGCAAGCACCCTTTTTTAGAGTCC
LOC_Os07g25570
OsAffx.28581.1.S1_at--182--8151Chr07:14659120..14659144 (25 bp)
GGACAACAACCTACTCACATGATGC
LOC_Os07g25570
OsAffx.28581.1.S1_at--20--5411Chr07:14659159..14659183 (25 bp)
GAAGCTTTCGATTCTTCGGAAGCAA
LOC_Os07g25570
Target Sequence 
ATGGCGCGCGCTCGAGCTTTGCAATTTTTCCCCTTCCCTTCTCTGCTTCTCTCGTTGACGCGGTGGAGGCAGCGAACGGT
CCGTCATCCTGGTCGTCGGCATCATGGTCGTCCAACCACGTCCACCGGCGAACTCAGAGAAAGCTCGGGCAACCGGCAAT
GGAGACGCCCGATGGAAAGCCTGCGAGCAGCGAGGACGGCGACGGCAGGGACATCCCCTATGAGTCCAAGGACAACGAAG
GTGAAGGCTCAGCCAGGCTAGGCCGCGTGGTTTTCAAGGCTGGTTTCGCCTGGATCTGCTCGGGAGGCATACTGGATGGC
GACAACGATGACGGCTGCAGCGAGGTTCTGTGGTGGCAGGATACCACGGCAACGGCAACAAGGAGTCCTGAAACGGTTTT
CAGCAAGCACCCTTTTTTAGAGTCCCCACAAATTCGTGGACAACAACCTACTCACATGATGCATGGGTTTATTTGGGAAG
CTTTCGATTCTTCGGAAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis