Browse Element(s) Details


OsAffx.16407.2.S1_x_at

Description tigr:9630.m02647
TID=OsAffx.16407.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2783011/11hypothetical protein
LOC_Os10g249546/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os02g225902/11expressed protein
LOC_Os02g225801/11hypothetical protein
LOC_Os07g256101/11hypothetical protein
LOC_Os07g151501/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g27790OsAffx.24465.1.S1_at11/112+16443666..16447615Splicing factor 3B subunit 1, putative, expressed
LOC_Os02g27800OsAffx.7656.2.S1_x_at5/112+16449258..16449908hypothetical protein
LOC_Os02g27810Os.47877.1.S1_at10/112+16460031..16462595expressed protein
LOC_Os02g27820OsAffx.24466.1.S1_x_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24466.1.S1_at11/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.24468.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.23633.1.A1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820Os.52323.1.S1_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27820OsAffx.10528.1.S1_x_at1/112+16464612..16470851hypothetical protein
LOC_Os02g27830OsAffx.16407.2.S1_x_at11/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.27026.1.A1_x_at7/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_x_at3/112+16471329..16478176hypothetical protein
LOC_Os02g27830Os.46303.1.S1_at2/112+16471329..16478176hypothetical protein
LOC_Os02g27830OsAffx.31874.1.S1_at1/112+16471329..16478176hypothetical protein
LOC_Os02g27840OsAffx.16407.3.S1_s_at11/112+16479491..16480909hypothetical protein
LOC_Os02g27840OsAffx.16407.3.S1_at2/112+16479491..16480909hypothetical protein
LOC_Os02g27850Os.14861.2.S1_at9/112+16481976..16487633expressed protein
LOC_Os02g27850Os.14861.2.S1_x_at6/112+16481976..16487633expressed protein
LOC_Os02g27850Os.50367.1.A1_at5/112+16481976..16487633expressed protein
LOC_Os02g27870Os.19231.1.A1_s_at11/112+16487690..16495255expressed protein
LOC_Os02g27870Os.7388.2.S1_x_at1/112+16487690..16495255expressed protein
LOC_Os02g27880OsAffx.24468.1.S1_at10/112+16495886..16501371EF hand family protein
LOC_Os02g27880OsAffx.24466.1.S1_x_at2/112+16495886..16501371EF hand family protein
LOC_Os02g27880OsAffx.25325.1.S1_at1/112+16495886..16501371EF hand family protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16407.2.S1_x_at--211--5253Chr10:12521005..12521029 (25 bp)
GAATCACTTTCTCGTTCTATTACAC
LOC_Os10g24954
OsAffx.16407.2.S1_x_at--374--2774Chr10:12521346..12521370 (25 bp)
AAGAGTTGATAAGCGGCCTTCTGCA
LOC_Os10g24954
OsAffx.16407.2.S1_x_at--500--811Chr02:16472314..16472338 (25 bp)
ATGGGTACAAAGTTCAATGCCGCAC
LOC_Os02g27830
OsAffx.16407.2.S1_x_at--609--4512Chr02:16472296..16472320 (25 bp)
GCCGCACTTTATTAGCTTGAGTCTT
LOC_Os02g27830
OsAffx.16407.2.S1_x_at--666--252Chr02:16472154..16472178 (25 bp)
ATATCGAATCATTGCCTGGACTTGC
LOC_Os02g27830
OsAffx.16407.2.S1_x_at--689--10393Chr07:8700156..8700182 (25 bp)
TTTTGGATTCTTATACTAGTACGCC
NONE
OsAffx.16407.2.S1_x_at--1077--1814Chr10:12521996..12522020 (25 bp)
ACGCCATGCTCGAAGTTTTATCGTG
LOC_Os10g24954
OsAffx.16407.2.S1_x_at--489--10351Chr02:16471788..16471812 (25 bp)
TTTATCGTGCTCGTAGTGGACCAAG
LOC_Os02g27830
OsAffx.16407.2.S1_x_at--578--10455Chr10:12522057..12522081 (25 bp)
TTAGACCCAAATCCACTTATGCCAG
LOC_Os10g24954
OsAffx.16407.2.S1_x_at--515--695Chr10:12522153..12522177 (25 bp)
ATGAGAAAGGCATGCCCTGGCTCTA
LOC_Os10g24954
OsAffx.16407.2.S1_x_at--70--3536Chr10:12522163..12522187 (25 bp)
CATGCCCTGGCTCTAGGTGGAATGA
LOC_Os10g24954
Target Sequence 
GAATCACTTTCTCGTTCTATTACACAGATGAGTAAACAAGAGTTGATAAGCGGCCTTCTGCACTACATCCAACAGATTAA
TTGTGCTGAAGCCATGGAGAAAATATGGGTACAAAGTTCAATGCCGCACTTTATTAGCTTGAGTCTTAAACAGCTTCAAA
CAATACTAAAGAAGGACGAGCCATTGGAAAGTGAATGCTTCAACATGGCTATTCATAAGTTCATGTATGAAAAAATCGAG
ATGATTCATAAAACTAAAGAAGCAATATCGAATCATTGCCTGGACTTGCAATTTTGGATTCTTATACTAGTACGCCATGC
TCGAAGTTTTATCGTGCTCGTAGTGGACCAAGAAAGTCAAACGCTCTATGTATTAGACCCAAATCCACTTATGCCAGAAT
ATAAAAATAACCCAAACATGAGATACACCAGAAAACTGATAACTATTTGTGATCACTTCAACAAAGCTATGAGAAAGGCA
TGCCCTGGCTCTAGGTGGAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16407.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis