Browse Element(s) Details


OsAffx.16407.3.S1_at

Description tigr:9638.m02100
TID=OsAffx.16407.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2495411/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os02g278402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24910Os.46012.2.S1_x_at3/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24910Os.46012.3.S1_x_at2/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24910Os.27088.1.A1_x_at1/1110+12490340..12495081retrotransposon protein, putative, unclassified
LOC_Os10g24920NANA10+12496633..12500980retrotransposon, putative, centromere-specific
LOC_Os10g24940Os.50367.1.A1_at11/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.51229.1.S1_at5/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.38268.3.S1_x_at2/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.54892.1.S1_at1/1110+12502939..12512359expressed protein
LOC_Os10g24940Os.7388.2.S1_x_at1/1110+12502939..12512359expressed protein
LOC_Os10g24954OsAffx.16407.3.S1_s_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.3.S1_at11/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.27026.1.A1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_x_at10/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954OsAffx.16407.2.S1_x_at6/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24954Os.46303.1.S1_at2/1110+12513601..12522495Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os10g24970OsAffx.18389.1.S1_at11/1110+12523918..12524400hypothetical protein
LOC_Os10g24980OsAffx.17094.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.25548.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24980OsAffx.17842.1.S1_at1/1110+12526544..12528991retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g25000Os.54065.1.S1_at10/1110+12536568..12538535expressed protein
LOC_Os10g25010Os.50669.1.S1_at11/1110+12539503..12542703Caltractin, putative, expressed
LOC_Os10g25010Os.11064.1.S1_a_at11/1110+12539503..12542703Caltractin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16407.3.S1_at--993--4112Chr10:12514255..12514448 (25 bp)
CGCACGCCTCATGATGTCATTGGAT
LOC_Os10g24954
OsAffx.16407.3.S1_at--496--3352Chr10:12514257..12514450 (25 bp)
CACGCCTCATGATGTCATTGGATTA
LOC_Os10g24954
OsAffx.16407.3.S1_at--946--6852Chr10:12514482..12514506 (25 bp)
GTTTGTATTTGCGTCAGACGCCGAC
LOC_Os10g24954
OsAffx.16407.3.S1_at--767--8751Chr10:12514485..12514509 (25 bp)
TGTATTTGCGTCAGACGCCGACAAG
LOC_Os10g24954
OsAffx.16407.3.S1_at--475--4651Chr10:12514492..12514516 (25 bp)
GCGTCAGACGCCGACAAGGATAATC
LOC_Os10g24954
OsAffx.16407.3.S1_at--489--7091Chr10:12514494..12514518 (25 bp)
GTCAGACGCCGACAAGGATAATCGC
LOC_Os10g24954
OsAffx.16407.3.S1_at--753--2991Chr10:12514897..12514921 (25 bp)
AATGTTTTGCGCCAGGCATTAGCAG
LOC_Os10g24954
OsAffx.16407.3.S1_at--115--8791Chr10:12514899..12514923 (25 bp)
TGTTTTGCGCCAGGCATTAGCAGTA
LOC_Os10g24954
OsAffx.16407.3.S1_at--470--10711Chr10:12514903..12514927 (25 bp)
TTGCGCCAGGCATTAGCAGTATCAC
LOC_Os10g24954
OsAffx.16407.3.S1_at--1008--5911Chr10:12514942..12514966 (25 bp)
GAGCAGGTTGAAGAGTCTATCGGTA
LOC_Os10g24954
OsAffx.16407.3.S1_at--653--3471Chr10:12514945..12514969 (25 bp)
CAGGTTGAAGAGTCTATCGGTAGAA
LOC_Os10g24954
Target Sequence 
CGCACGCCTCATGATGTCATTGGATTAGTTGTGCATGTCGGGGACATTGAGTTCAGGAGTTTGTATTTGCGTCAGACGCC
GACAAGGATAATCGCGCTGGTTAATCCTAGGTTGCAGATAATTTTCGTTCGTGTATGGGACCAACAACTTACCCGCAACT
TGACTAGGTGGCGCTCAGCACGGACACATTTCGATTGTTTTGTGGCTACGCTGACGAGGGTGGACAGAAGAGCAGATGAA
CTATCAACTACTTATGAGTCTGACATAATTTTTAATCCTGATTCAGCATCAGCAAATGAATTCAATGTTTTGCGCCAGGC
ATTAGCAGTATCACCTTCTAATGTTCAAGAGCAGGTTGAAGAGTCTATCGGTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16407.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis