Browse Element(s) Details


Os.38268.3.S1_x_at

Description gb:NM_193525.1
DB_XREF= gi:34914133
GEN=P0496H05.16
TID=Os.38268.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0496H05.16 (P0496H05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0496H05.16 (P0496H05.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g381005/11expressed protein
LOC_Os05g491643/11expressed protein
LOC_Os10g249402/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38040NANA1+21639458..21641589hypothetical protein
LOC_Os01g38049OsAffx.31869.1.S1_at8/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_s_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_x_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.5.S1_x_at2/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.2.S1_at1/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.1.S1_at8/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_s_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_x_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.5.S1_x_at2/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.2.S1_at1/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38070NANA1+21655604..21656863hypothetical protein
LOC_Os01g38080NANA1+21657591..21658940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38090OsAffx.23548.1.S1_x_at3/111+21661727..21661927hypothetical protein
LOC_Os01g38100Os.15891.1.A1_s_at11/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.1.S1_at11/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.2.S1_s_at9/111+21664820..21667800expressed protein
LOC_Os01g38100Os.56140.1.S1_x_at7/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.3.S1_x_at5/111+21664820..21667800expressed protein
LOC_Os01g38110Os.34962.1.S1_at2/111+21669225..21670799Cytochrome P450 family protein, expressed
LOC_Os01g38120OsAffx.23549.1.S1_at11/111+21674883..21676521hypothetical protein
LOC_Os01g38120OsAffx.23549.1.S1_x_at11/111+21674883..21676521hypothetical protein
LOC_Os01g38120OsAffx.23548.1.S1_x_at1/111+21674883..21676521hypothetical protein
LOC_Os01g38130OsAffx.11370.1.S1_at11/111+21676685..21677226hypothetical protein
LOC_Os01g38130OsAffx.11370.1.S1_x_at11/111+21676685..21677226hypothetical protein
LOC_Os01g38140Os.25754.2.S1_x_at3/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38140Os.53479.1.S1_x_at1/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38140Os.52574.2.S1_x_at1/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38268.3.S1_x_at--912--4711Chr01:21668540..21668564 (25 bp)
GCTGAAAATCTAGCCCGGTTTGACG
NONE
Os.38268.3.S1_x_at--820--2251Chr01:21668535..21668559 (25 bp)
AAATCTAGCCCGGTTTGACGCCATG
NONE
Os.38268.3.S1_x_at--983--1651Chr01:21668529..21668553 (25 bp)
AGCCCGGTTTGACGCCATGAAGAGA
NONE
Os.38268.3.S1_x_at--836--8931Chr01:21668520..21668544 (25 bp)
TGACGCCATGAAGAGATCCATACAT
NONE
Os.38268.3.S1_x_at--351--571NONE
ATCCATACATGGAAAACCACGCCCG
NONE
Os.38268.3.S1_x_at--1102--311NONE
ATACATGGAAAACCACGCCCGCCGG
NONE
Os.38268.3.S1_x_at--1137--4955Chr10:12503106..12503130 (25 bp)
GCATCGGATCGATCATCCACCTTCG
LOC_Os10g24940
Os.38268.3.S1_x_at--107--1535Chr10:12503319..12503343 (25 bp)
AGCAGGAGGTCACGCCGCGTCAACA
LOC_Os10g24940
Os.38268.3.S1_x_at--282--7633Chr08:14558043..14558067 (25 bp)
GGGACCGAACGCTGACCCTGCATCG
NONE
Os.38268.3.S1_x_at--135--3553Chr08:14558063..14558087 (25 bp)
CATCGACGCCACAACAGTCGACAGA
NONE
Os.38268.3.S1_x_at--70--6275Chr08:14558093..14558117 (25 bp)
GATGTTGAAGACCTCACTCCAACGA
NONE
Target Sequence 
GCTGAAAATCTAGCCCGGTTTGACGCCATGAAGAGATCCATACATGGAAAACCACGCCCGCCGGCCTCCTCCGCGATCGC
CGCCGCCCTCTCCAACGCGCCTCCACCTCGCATCGGATCGATCATCCACCTTCGCCCTCCTCCCTGCGTCGCCTCCTCGC
CTCCTCACCTTCACACCTCGCCACCGCATCGCCTCCTCAGCAGCCCCGTGCCCCGCGCCCCGCGTCCCGCGCCGCCCTCG
ACCGCCGACGCTGCGACCCGCGCCGTCTCCTCGCTGCCGTCGCCGCGCCCCGAGTCCCGCGTCCCGCGCTGCCCTCTACC
GCCGATGCGGGAGCAGGAGGTCACGCCGCGTCAACACCGCCGAGGAGCCGCTTCCTCGCCGCCGTCGCGACGACCCGCGC
CGCCCTCGACTGCCGCCACCTCCGCAGATCGCCATCGCACGCCTCCGCCTCTCAAGGTCACACGCTCATCGCCGCCCGAC
ACCCCGCCGATTGGGGACCGAACGCTGACCCTGCATCGACGCCACAACAGTCGACAGAGGGGAGATGTTGAAGACCTCAC
TCCAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38268.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis