Browse Element(s) Details


Os.38268.1.S1_at

Description gb:AK071428.1
DB_XREF= gi:32981451
TID=Os.38268.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0496H05.16 (P0496H05.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092F23, full insert sequence.
FL= gb:AK071428.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3810011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g38040NANA1+21639458..21641589hypothetical protein
LOC_Os01g38049OsAffx.31869.1.S1_at8/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_s_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.3.S1_x_at3/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.5.S1_x_at2/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38049OsAffx.31869.2.S1_at1/111+21647089..21648198retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.1.S1_at8/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_s_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_x_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.3.S1_at3/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.5.S1_x_at2/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38058OsAffx.31869.2.S1_at1/111+21652255..21653364retrotransposon protein, putative, unclassified
LOC_Os01g38070NANA1+21655604..21656863hypothetical protein
LOC_Os01g38080NANA1+21657591..21658940retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g38090OsAffx.23548.1.S1_x_at3/111+21661727..21661927hypothetical protein
LOC_Os01g38100Os.15891.1.A1_s_at11/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.1.S1_at11/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.2.S1_s_at9/111+21664820..21667800expressed protein
LOC_Os01g38100Os.56140.1.S1_x_at7/111+21664820..21667800expressed protein
LOC_Os01g38100Os.38268.3.S1_x_at5/111+21664820..21667800expressed protein
LOC_Os01g38110Os.34962.1.S1_at2/111+21669225..21670799Cytochrome P450 family protein, expressed
LOC_Os01g38120OsAffx.23549.1.S1_at11/111+21674883..21676521hypothetical protein
LOC_Os01g38120OsAffx.23549.1.S1_x_at11/111+21674883..21676521hypothetical protein
LOC_Os01g38120OsAffx.23548.1.S1_x_at1/111+21674883..21676521hypothetical protein
LOC_Os01g38130OsAffx.11370.1.S1_at11/111+21676685..21677226hypothetical protein
LOC_Os01g38130OsAffx.11370.1.S1_x_at11/111+21676685..21677226hypothetical protein
LOC_Os01g38140Os.25754.2.S1_x_at3/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38140Os.53479.1.S1_x_at1/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os01g38140Os.52574.2.S1_x_at1/111+21681317..21692207peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38268.1.S1_at--1057--7374Chr08:14559891..14559915 (25 bp)
GTGACCCTTGATGGTTGTATGCAGT
NONE
Os.38268.1.S1_at--533--2375Chr08:14559974..14559998 (25 bp)
AAACCATCATTTATCTTCACTATTG
NONE
Os.38268.1.S1_at--641--5695Chr08:14559998..14560022 (25 bp)
GACTTACAATTTCACTTCTAGCTGA
NONE
Os.38268.1.S1_at--266--3093Chr08:14560087..14560111 (25 bp)
AATAACAGAGTCAGCTCCTTCCGAA
NONE
Os.38268.1.S1_at--1035--1573Chr08:14560099..14560123 (25 bp)
AGCTCCTTCCGAACGATGGCAAAAT
NONE
Os.38268.1.S1_at--631--9735Chr08:14560134..14560158 (25 bp)
TAATTTTACTTCTCAACACGCACAC
NONE
Os.38268.1.S1_at--1151--5475Chr08:14560178..14560202 (25 bp)
GAACTTTTGTTCTCCTTGTCAGATT
NONE
Os.38268.1.S1_at--188--10075Chr08:14560270..14560294 (25 bp)
TAGTGCATACTCTCATATTTGGAAG
NONE
Os.38268.1.S1_at--808--6533Chr08:14560327..14560351 (25 bp)
GATTTAATCTATTCTCTCTTGGGCA
NONE
Os.38268.1.S1_at--981--9513Chr08:14560339..14560363 (25 bp)
TCTCTCTTGGGCATTTATTCGCAAA
NONE
Os.38268.1.S1_at--187--6555Chr08:14560396..14560420 (25 bp)
GATTATGGCAACCTTGGCTTTGTGG
NONE
Target Sequence 
GTGACCCTTGATGGTTGTATGCAGTTGGGATATTTTGGTGAGTTCATCCCCCTTCCCCACCCCACCTCTCTCTCTCTCTC
AAAACCATCATTTATCTTCACTATTGACTTACAATTTCACTTCTAGCTGATGATGATCAATCAAAGCTAGCTCATATGTA
TTAGTGAGTTTATGAAAAAAAGGATCAGATATTCAATAACAGAGTCAGCTCCTTCCGAACGATGGCAAAATGGTACCTTT
ATAATTTTACTTCTCAACACGCACACATTTTTTTATGACGAGTTTGAACTTTTGTTCTCCTTGTCAGATTTTATCTGAAG
CAAGTATCATATACTTCTGTATTAGAATATGGACGCAATCATATATCTCCTAAGGTTTAGTGCATACTCTCATATTTGGA
AGTGAATACCAAACGTGTATGAAATAGTGCATTCGATTTAATCTATTCTCTCTTGGGCATTTATTCGCAAATGCAAAGAT
TTTTGTAATTTGATCGTAGCATAGATTATGGCAACCTTGGCTTTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis