Browse Element(s) Details


Os.56140.1.S1_x_at

Description gb:AK109359.2
DB_XREF= gi:42821676
TID=Os.56140.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.56140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-206-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-A11, full insert sequence.
FL= gb:AK109359.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g491647/11expressed protein
LOC_Os01g381007/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g49130Os.53738.1.S1_at11/115+28099855..2810542116S rRNA processing protein RimM family, putative, expressed
LOC_Os05g49140Os.11617.1.S1_at11/115+28105490..28110750Protein kinase domain containing protein, expressed
LOC_Os05g49150Os.11175.1.S1_at11/115+28118856..28120955Eukaryotic translation initiation factor 3 subunit 7, putative, expressed
LOC_Os05g49160Os.10680.1.S1_at10/115+28122194..28125363negatively light-regulated protein, putative, expressed
LOC_Os05g49164Os.15891.1.A1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.2.S1_s_at11/115+28127135..28129253expressed protein
LOC_Os05g49164Os.56140.1.S1_x_at7/115+28127135..28129253expressed protein
LOC_Os05g49164Os.38268.3.S1_x_at3/115+28127135..28129253expressed protein
LOC_Os05g49170Os.13917.1.S1_at10/115+28130538..28132773cold acclimation protein COR413-TM1, putative, expressed
LOC_Os05g49180Os.8463.1.S3_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S2_at11/115+28136875..28145528expressed protein
LOC_Os05g49180Os.8463.1.S1_at11/115+28136875..28145528expressed protein
LOC_Os05g49200Os.8298.1.S1_at11/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g49200Os.13741.1.S1_s_at1/115+28148627..28154216Aspartic proteinase oryzasin-1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56140.1.S1_x_at--727--7915Chr08:14558179..14558203 (25 bp)
GGTTGTTCGTCCTTGCCCAGATCAA
NONE
Os.56140.1.S1_x_at--742--5932Chr03:27346970..27346994 (25 bp)
GAGCACGATCCCTCCGGCAGAACTT
NONE
Os.56140.1.S1_x_at--820--8092Chr03:27347007..27347031 (25 bp)
GGACGCATGGTTAATTGGTTCGTTC
NONE
Os.56140.1.S1_x_at--678--8575Chr08:14558431..14558454 (24 bp)
TGGTTCGTTCTCTTTACGTTGCAAC
NONE
Os.56140.1.S1_x_at--230--9692Chr03:27347105..27347129 (25 bp)
TCACTAATGCTCTTTTTTGCCCAAA
NONE
Os.56140.1.S1_x_at--132--8795Chr08:14558542..14558566 (25 bp)
TGTTCAACGAAATGCTGCTTAGCCA
NONE
Os.56140.1.S1_x_at--18--5294Chr08:14558601..14558625 (25 bp)
GAATGTCATATTGTCATGTCCCCTA
NONE
Os.56140.1.S1_x_at--1026--7114Chr08:14558613..14558637 (25 bp)
GTCATGTCCCCTATGTTGTTATTTA
NONE
Os.56140.1.S1_x_at--670--6595Chr08:14558645..14558669 (25 bp)
GATTGCAGGATTCTCTCTGTTGTTA
NONE
Os.56140.1.S1_x_at--876--5711Chr03:27347300..27347324 (25 bp)
GACTCTAGGGCTATGAACTGCTGGG
NONE
Os.56140.1.S1_x_at--631--2815Chr08:14558691..14558715 (25 bp)
AAGTTGAGAGTGTTGCTACCAAGCA
NONE
Target Sequence 
GGTTGTTCGTCCTTGCCCAGATCAACGCCGCCGCCGATCCCTCACTCGCCCCTCGCCCAGGTCGGTGCCAAGGGCGAGGT
TCGCCAATCTGCTTCCCAGCCGCCTCGCCCGCTCCATGGGAGAGGTGACACCTGTGCCCGCCTCCAGCGCTCCATGCCCC
CGGTACCATCCGAGCACGATCCCTCCGGCAGAACTTCTGCCGGAGAAGGGACGCATGGTTAATTGGTTCGTTCTCTTTAC
GTTGCAACCCATTCATTTGTCAAGAATCATCACTGTGAGTGTCGAGGGTTATTACAGATTGCAGGATCACTAATGCTCTT
TTTTGCCCAAAAGGTGTTCAACGAAATGCTGCTTAGCCAATGTATTACCAGAAATTGATTTCTCTGTAAGTGAGAATGTC
ATATTGTCATGTCCCCTATGTTGTTATTTATACTAATGATTGCAGGATTCTCTCTGTTGTTATTTATGCTAATGTAATGA
AATATCCAATTACTATGTATAGACTCTAGGGCTATGAACTGCTGGGAAGTTGAGAGTGTTGCTACCAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56140.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis