Browse Element(s) Details


Os.13741.1.S1_s_at

Description gb:AK072645.1
DB_XREF= gi:32982668
TID=Os.13741.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13741 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131B07, full insert sequence.
FL= gb:AK072645.1 gb:AK072283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4741011/11Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os05g492001/11Aspartic proteinase oryzasin-1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein
LOC_Os01g47390OsAffx.23699.1.S1_at11/111+27403376..27404388hypothetical protein
LOC_Os01g47400Os.10006.2.S1_x_at11/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47400Os.10006.1.S1_at10/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47410Os.13741.1.S1_s_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_x_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_at10/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.51743.1.S1_at1/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47420Os.17029.1.S1_at11/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47420OsAffx.21425.1.S1_at10/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47430Os.14874.2.S1_x_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.1.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.2.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47440NANA1+27439698..27440354hypothetical protein
LOC_Os01g47450Os.41793.1.S1_at11/111+27442510..27448023carboxyl-terminal protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13741.1.S1_s_at--953--9951Chr01:27413287..27413311 (25 bp)
TACCCAGTGCATCAGTGGATTCACA
LOC_Os01g47410
Os.13741.1.S1_s_at--923--1812Chr05:28153532..28153555 (24 bp)
ACCCAGTGCATCAGTGGATTCACAG
LOC_Os05g49200
Os.13741.1.S1_s_at--877--3451Chr01:27413283..27413307 (25 bp)
CAGTGCATCAGTGGATTCACAGCTA
LOC_Os01g47410
Os.13741.1.S1_s_at--685--7331Chr01:27413281..27413305 (25 bp)
GTGCATCAGTGGATTCACAGCTATG
LOC_Os01g47410
Os.13741.1.S1_s_at--360--4971Chr01:27413279..27413303 (25 bp)
GCATCAGTGGATTCACAGCTATGGA
LOC_Os01g47410
Os.13741.1.S1_s_at--43--9651Chr01:27413276..27413300 (25 bp)
TCAGTGGATTCACAGCTATGGACAT
LOC_Os01g47410
Os.13741.1.S1_s_at--761--191Chr01:27412689..27412713 (25 bp)
ATTTGGCTAAGCTAAATATAAGTAG
LOC_Os01g47410
Os.13741.1.S1_s_at--693--191Chr01:27412674..27412698 (25 bp)
ATATAAGTAGGCAGAATTCAGACGA
LOC_Os01g47410
Os.13741.1.S1_s_at--259--5211Chr01:27412661..27412685 (25 bp)
GAATTCAGACGACAGTTTATCACAG
LOC_Os01g47410
Os.13741.1.S1_s_at--113--131Chr01:27412659..27412683 (25 bp)
ATTCAGACGACAGTTTATCACAGGA
LOC_Os01g47410
Os.13741.1.S1_s_at--597--9651Chr01:27412657..27412681 (25 bp)
TCAGACGACAGTTTATCACAGGAAA
LOC_Os01g47410
Target Sequence 
TACCCAGTGCATCAGTGGATTCACAGCTATGGACATTCCTCCTCCTCGTGGTCCTCTCTGGATCTTGGGAGATGTCTTTA
TGGGAGCCTACCATACCGTGTTTGACTATGGCAACCTGAAGGTTGGCTTCGCAGAGGCGGCATAATGCCCCCCATGGTGA
TCGGACGAATCGGAGAGCCCTTAGCTTTTCAGCTCGGGTTTATCTCCCGCAAGCGTGTAGGTATATATTTTAGTGCATGC
TCAATAAATATTGCTACTGTGATCTCAAAACCTGTCTGTTTTAATTTGGCTAAGCTAAATATAAGTAGGCAGAATTCAGA
CGACAGTTTATCACAGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13741.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis