Browse Element(s) Details


OsAffx.21428.1.S1_at

Description gb:NM_192499.1
DB_XREF= gi:34912081
GEN=P0671D01.20
TID=OsAffx.21428.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0671D01.20 (P0671D01.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g473701/11RADIALIS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein
LOC_Os01g47390OsAffx.23699.1.S1_at11/111+27403376..27404388hypothetical protein
LOC_Os01g47400Os.10006.2.S1_x_at11/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47400Os.10006.1.S1_at10/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47410Os.13741.1.S1_s_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_x_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_at10/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.51743.1.S1_at1/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21428.1.S1_at--100--6711Chr01:27390298..27390776 (25 bp)
GTTCCCCAATGGTATGCACGATGCA
LOC_Os01g47370
OsAffx.21428.1.S1_at--617--10851NONE
TTGGTTTGCACATAGGCTGCGCGAC
NONE
OsAffx.21428.1.S1_at--376--10691Chr01:27388205..27388229 (25 bp)
TTGCCGGGACGACTTTTGAGCCGCC
NONE
OsAffx.21428.1.S1_at--478--8871Chr01:27388158..27388182 (25 bp)
TGATGGGCTTATTTCTCCCAACGGC
NONE
OsAffx.21428.1.S1_at--121--10631Chr01:27387161..27387182 (22 bp)
TTCGCTGGACCACCGGATGGGTCAC
NONE
OsAffx.21428.1.S1_at--557--4511Chr01:27387129..27387153 (25 bp)
GCCCCGCTAAACTCGGTGACGGCGA
NONE
OsAffx.21428.1.S1_at--741--1911Chr01:27387111..27387135 (25 bp)
ACGGCGACAAAAGCTCCTCAAAGGA
NONE
OsAffx.21428.1.S1_at--803--1591Chr01:27387100..27387124 (25 bp)
AGCTCCTCAAAGGATGCCATGGGCC
NONE
OsAffx.21428.1.S1_at--821--2471Chr01:27385889..27385910 (22 bp)
AACACTCCTCGTCCGATGGGCAGTG
NONE
OsAffx.21428.1.S1_at--558--3851Chr01:27385880..27385904 (25 bp)
CGTCCGATGGGCAGTGACATGTACC
NONE
OsAffx.21428.1.S1_at--641--711Chr01:27385833..27385857 (25 bp)
ATGATCAGGCATACAGTCGCGGCGC
NONE
Target Sequence 
GTTCCCCAATGGTATGCACGATGCACCATTTTGTGATTATTGGTTTGCACATAGGCTGCGCGACGAGGCCGCGGGCGACC
GGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGCGCCCCTTCACCTGCGGCGGATTCGCCCTTGCCGGGACGACTTTTGAGC
CGCCCAACCACCGAGCGCCCAAGGCCTGATGGGCTTATTTCTCCCAACGGCCCATATACCTTCACGGGCCGTCCTGCTTC
GCTGGACCACCGGATGGGTCACGTCGCCGGCCCCGCTAAACTCGGTGACGGCGACAAAAGCTCCTCAAAGGATGCCATGG
GCCGGGGTGCTAGCTTGCCGACAACACTCCTCGTCCGATGGGCAGTGACATGTACCACCACCACCACTCGCAGGAGAAAT
GATCAGGCATACAGTCGCGGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis