Browse Element(s) Details


Os.19161.1.S1_at

Description gb:AK068152.1
DB_XREF= gi:32978170
TID=Os.19161.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19161 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative naphthoate synthase (P0671D01.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129J09, full insert sequence.
FL= gb:AK068152.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4735011/11Naphthoate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein
LOC_Os01g47390OsAffx.23699.1.S1_at11/111+27403376..27404388hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0007275biological_processdevelopment
GO:0008152biological_processmetabolism
GO:0009845biological_processseed germination
GO:0009908biological_processflower development
GO:0042371biological_processvitamin K biosynthesis
GO:0005777cellular_componentperoxisome
GO:0003824molecular_functioncatalytic activity
GO:0004300molecular_functionenoyl-CoA hydratase activity
GO:0008935molecular_functionnaphthoate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19161.1.S1_at--1013--8431Chr01:27378245..27378441 (25 bp)
TGGCCTTCAGGAGCTCGGTGGCAAT
LOC_Os01g47350
Os.19161.1.S1_at--262--8231Chr01:27378226..27378250 (25 bp)
GGCAATGCGACACTGATCTTCTATG
LOC_Os01g47350
Os.19161.1.S1_at--85--3011Chr01:27378175..27378199 (25 bp)
AATGCATACATGGAGCGACGGCGCC
LOC_Os01g47350
Os.19161.1.S1_at--61--6531Chr01:27378148..27378172 (25 bp)
GATTTCTCAAAGTTCCCTCGGAAGC
LOC_Os01g47350
Os.19161.1.S1_at--326--6651Chr01:27378116..27378140 (25 bp)
GTTGAACTTGTGCACTACTAGTACA
LOC_Os01g47350
Os.19161.1.S1_at--760--2231Chr01:27378082..27378106 (25 bp)
ACAATTCTGCTGTATGTCATGACGC
LOC_Os01g47350
Os.19161.1.S1_at--247--2291Chr01:27378051..27378075 (25 bp)
AAATGCTACTCAAATCTCCGTTTCC
LOC_Os01g47350
Os.19161.1.S1_at--653--3951Chr01:27378013..27378037 (25 bp)
CGGAAGCATAGGTGGGCGTCCCAAT
LOC_Os01g47350
Os.19161.1.S1_at--1064--6031Chr01:27377956..27377980 (25 bp)
GAGATCGTTATCCTTTACATGTCAT
LOC_Os01g47350
Os.19161.1.S1_at--140--10211Chr01:27377878..27377902 (25 bp)
TATTCATCCCGACATATCATAGCCG
LOC_Os01g47350
Os.19161.1.S1_at--779--8431Chr01:27377842..27377866 (25 bp)
TGGCCTTGTGGTGCATTAGTTATTT
LOC_Os01g47350
Target Sequence 
TGGCCTTCAGGAGCTCGGTGGCAATGCGACACTGATCTTCTATGGAACTGAAGAGGCAAAAGAAGGCAAAAATGCATACA
TGGAGCGACGGCGCCCTGATTTCTCAAAGTTCCCTCGGAAGCCTTAAAAGTTGAACTTGTGCACTACTAGTACAGATTTC
TCTACAATTCTGCTGTATGTCATGACGCAGACTGAAATGCTACTCAAATCTCCGTTTCCTCGTCAACTCTGCCGGAAGCA
TAGGTGGGCGTCCCAATGATTGCCAGCCCCGGTGGACGGGTGTAGAAGCGAGATCGTTATCCTTTACATGTCATTTGTTA
GTTGGCATTTTTATAGGTGTAAATTGCAGTGCTTACGTATATGTGAATATTCATCCCGACATATCATAGCCGCTGGAAAT
AAATGGCCTTGTGGTGCATTAGTTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis