Browse Element(s) Details


Os.32597.1.S1_at

Description gb:AK103579.1
DB_XREF= gi:32988788
TID=Os.32597.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32597 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133A01, full insert sequence.
FL= gb:AK103579.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g473009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47262OsAffx.11501.1.S1_at11/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.1.S1_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.4.S1_x_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262OsAffx.11501.1.S1_x_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.4.S1_at1/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47270OsAffx.23697.1.S1_at11/111+27340681..27341796expressed protein
LOC_Os01g47270Os.41454.1.S1_s_at11/111+27340681..27341796expressed protein
LOC_Os01g47280Os.53332.1.S1_at11/111+27344773..27348483expressed protein
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32597.1.S1_at--344--2511Chr01:27360256..27360280 (25 bp)
AACATCATAGGCTTTCTTCTTCTAC
LOC_Os01g47300
Os.32597.1.S1_at--814--2091Chr01:27360255..27360279 (25 bp)
ACATCATAGGCTTTCTTCTTCTACA
LOC_Os01g47300
Os.32597.1.S1_at--1157--3051Chr01:27360210..27360234 (25 bp)
AATCTAGTCCTACTCAAATACTGCT
LOC_Os01g47300
Os.32597.1.S1_at--686--51Chr01:27360209..27360233 (25 bp)
ATCTAGTCCTACTCAAATACTGCTA
LOC_Os01g47300
Os.32597.1.S1_at--135--9551Chr01:27360208..27360232 (25 bp)
TCTAGTCCTACTCAAATACTGCTAT
LOC_Os01g47300
Os.32597.1.S1_at--857--3691Chr01:27360207..27360231 (25 bp)
CTAGTCCTACTCAAATACTGCTATT
LOC_Os01g47300
Os.32597.1.S1_at--209--10071Chr01:27360206..27360230 (25 bp)
TAGTCCTACTCAAATACTGCTATTT
LOC_Os01g47300
Os.32597.1.S1_at--905--1131Chr01:27360205..27360229 (25 bp)
AGTCCTACTCAAATACTGCTATTTC
LOC_Os01g47300
Os.32597.1.S1_at--789--7251Chr01:27360204..27360228 (25 bp)
GTCCTACTCAAATACTGCTATTTCA
LOC_Os01g47300
Target Sequence 
AACATCATAGGCTTTCTTCTTCTACATTATCTGCTTTCTGCAAGTAAATCTAGTCCTACTCAAATACTGCTATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32597.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis