Browse Element(s) Details


OsAffx.21429.1.S1_s_at

Description gb:NM_192494.1
DB_XREF= gi:34912071
GEN=P0671D01.15
TID=OsAffx.21429.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0671D01.15 (P0671D01.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4731011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47270OsAffx.23697.1.S1_at11/111+27340681..27341796expressed protein
LOC_Os01g47270Os.41454.1.S1_s_at11/111+27340681..27341796expressed protein
LOC_Os01g47280Os.53332.1.S1_at11/111+27344773..27348483expressed protein
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21429.1.S1_s_at--625--1971Chr01:27364493..27364517 (25 bp)
ACTGACATGTGAGCTCCGCATGCTG
LOC_Os01g47310
OsAffx.21429.1.S1_s_at--424--8911Chr01:27364502..27364526 (25 bp)
TGAGCTCCGCATGCTGATTCGCTTG
LOC_Os01g47310
OsAffx.21429.1.S1_s_at--1018--971Chr01:27365235..27365259 (25 bp)
AGGAGGTCATACTAGTGATCGTCAT
LOC_Os01g47310
OsAffx.21429.1.S1_s_at--1012--8831Chr01:27365250..27365274 (25 bp)
TGATCGTCATGGTGGCCGTTGGCCT
LOC_Os01g47310
OsAffx.21429.1.S1_s_at--1158--4491Chr01:27365264..27365288 (25 bp)
GCCGTTGGCCTGTTGTTAGTGGCAT
LOC_Os01g47310
OsAffx.21429.1.S1_s_at--1154--6771Chr01:27365278..27365302 (25 bp)
GTTAGTGGCATGCTTGGTTCTCAAC
LOC_Os01g47310
OsAffx.21429.1.S1_s_at--642--4931Chr01:27365289..27365313 (25 bp)
GCTTGGTTCTCAACTTCAACTGGAA
LOC_Os01g47310
OsAffx.21429.1.S1_s_at--672--8191Chr01:27365310..27365334 (25 bp)
GGAAGTACTGCTGCAAGGATGGCAA
LOC_Os01g47310
OsAffx.21429.1.S1_s_at--503--2211Chr01:27365337..27365361 (25 bp)
ACAAGCACAGCAAGGCGATTGGCAC
LOC_Os01g47310
OsAffx.21429.1.S1_s_at--712--10851Chr01:27365355..27365379 (25 bp)
TTGGCACGCACGGTGACGGCCACAT
LOC_Os01g47310
OsAffx.21429.1.S1_s_at--306--5731Chr01:27365369..27365393 (25 bp)
GACGGCCACATTTCTATCAGTAGCA
LOC_Os01g47310
Target Sequence 
ACTGACATGTGAGCTCCGCATGCTGATTCGCTTGCTGCTGAATCTGGAGTTGAAGGGTGTAGAGGACATGAACCACAAGG
AGGAGGTCATACTAGTGATCGTCATGGTGGCCGTTGGCCTGTTGTTAGTGGCATGCTTGGTTCTCAACTTCAACTGGAAG
TACTGCTGCAAGGATGGCAAGAACAAGCACAGCAAGGCGATTGGCACGCACGGTGACGGCCACATTTCTATCAGTAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21429.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis