Browse Element(s) Details


Os.41454.1.S1_s_at

Description gb:NM_192491.1
DB_XREF= gi:34912065
GEN=P0445H04.35
TID=Os.41454.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445H04.35 (P0445H04.35), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0445H04.35 (P0445H04.35), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4727011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47240NANA1+27318809..27322045transposon protein, putative, unclassified
LOC_Os01g47250NANA1+27322692..27328847retrotransposon protein, putative, unclassified
LOC_Os01g47256Os.13615.2.S1_at11/111+27331109..27334886Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g47262OsAffx.11501.1.S1_at11/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.1.S1_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.4.S1_x_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262OsAffx.11501.1.S1_x_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.4.S1_at1/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47270OsAffx.23697.1.S1_at11/111+27340681..27341796expressed protein
LOC_Os01g47270Os.41454.1.S1_s_at11/111+27340681..27341796expressed protein
LOC_Os01g47280Os.53332.1.S1_at11/111+27344773..27348483expressed protein
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41454.1.S1_s_at--825--2771Chr01:27341404..27341428 (25 bp)
AAGAGCGGGAGTTCCGGGCGAGGCA
LOC_Os01g47270
Os.41454.1.S1_s_at--248--1371Chr01:27341296..27341320 (25 bp)
AGAGCTACTGCCTCTGGGCTCCGGG
LOC_Os01g47270
Os.41454.1.S1_s_at--159--8071Chr01:27341148..27341172 (25 bp)
GGAGAAGTTCGTGTTCCTCAACGCC
LOC_Os01g47270
Os.41454.1.S1_s_at--122--8411Chr01:27341039..27341063 (25 bp)
GGCCGCCACGGCTGGAGCTATTACA
LOC_Os01g47270
Os.41454.1.S1_s_at--384--4411Chr01:27341035..27341059 (25 bp)
GCCACGGCTGGAGCTATTACAGCAA
LOC_Os01g47270
Os.41454.1.S1_s_at--425--8351Chr01:27340991..27341015 (25 bp)
GGCGGCCGTCGGAGATCGTATCTTC
LOC_Os01g47270
Os.41454.1.S1_s_at--885--7171Chr01:27340984..27341008 (25 bp)
GTCGGAGATCGTATCTTCCCTACAA
LOC_Os01g47270
Os.41454.1.S1_s_at--536--1271Chr01:27340979..27341003 (25 bp)
AGATCGTATCTTCCCTACAAGCAAG
LOC_Os01g47270
Os.41454.1.S1_s_at--665--431Chr01:27340972..27340996 (25 bp)
ATCTTCCCTACAAGCAAGAGCTCGT
LOC_Os01g47270
Os.41454.1.S1_s_at--889--3231Chr01:27340962..27340986 (25 bp)
CAAGCAAGAGCTCGTCGGGTTGTTC
LOC_Os01g47270
Os.41454.1.S1_s_at--223--1371Chr01:27340956..27340980 (25 bp)
AGAGCTCGTCGGGTTGTTCGCCAAC
LOC_Os01g47270
Target Sequence 
AAGAGCGGGAGTTCCGGGCGAGGCAGCGGGAGAGCTCGGGAACGTCNCCGGTGCAGCCGCAGCGGCGGCGGCCGGACGAC
GAGGGCGAGCTGGAGGGGGTGCCGCCGGAGAGCTACTGCCTCTGGGCTCCGGGCGGGCAGCCGTCGACGACGCCAGCGTC
CCCGCGGCGGTGCCGGAAGAGCGGCTCCACGGGGTCNGTGCTCCNGTGGCGCCGCATCANCGAGCGCCTCGTCCGCCGGA
GCCACAGCGACGGCAAGGAGAAGTTCGTGTTCCTCAACGCCCCCGGCGGCGGCGCCCCGTCGCCTCACCCGCCCAAGGAC
AACGACGATGCAAACGGCGGCGGCAGCGTCGGCAAGGGCGACGCCGGCCGCCACGGCTGGAGCTATTACAGCAAGGGCGG
CGGCGGCGGCAGCGGCGGCCGTCGGAGATCGTATCTTCCCTACAAGCAAGAGCTCGTCGGGTTGTTCGCCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41454.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis