Browse Element(s) Details


Os.13615.2.S1_at

Description gb:AK073113.1
DB_XREF= gi:32983136
TID=Os.13615.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13615 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0445H04.34 (P0445H04.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022G03, full insert sequence.
FL= gb:AK073113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4725611/11Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g667301/11Exosome complex exonuclease RRP40, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47210NANA1+27308167..27308427hypothetical protein
LOC_Os01g47220NANA1+27311754..27313103retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g47230NANA1+27313704..27315510retrotransposon protein, putative, unclassified
LOC_Os01g47240NANA1+27318809..27322045transposon protein, putative, unclassified
LOC_Os01g47250NANA1+27322692..27328847retrotransposon protein, putative, unclassified
LOC_Os01g47256Os.13615.2.S1_at11/111+27331109..27334886Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g47262OsAffx.11501.1.S1_at11/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.1.S1_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.4.S1_x_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262OsAffx.11501.1.S1_x_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.4.S1_at1/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47270OsAffx.23697.1.S1_at11/111+27340681..27341796expressed protein
LOC_Os01g47270Os.41454.1.S1_s_at11/111+27340681..27341796expressed protein
LOC_Os01g47280Os.53332.1.S1_at11/111+27344773..27348483expressed protein
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13615.2.S1_at--415--6351Chr01:27334587..27334611 (25 bp)
GATGCGTTTTGATGTCTTATATATG
LOC_Os01g47256
Os.13615.2.S1_at--958--8812Chr01:27334624..27334648 (25 bp)
TGATTCCGCTTATGAAACTTCATAG
LOC_Os01g47256
Os.13615.2.S1_at--535--6691Chr01:27334657..27334681 (25 bp)
GTTCCAATCATACGTGATACGCTGG
LOC_Os01g47256
Os.13615.2.S1_at--79--2912Chr01:27334708..27334732 (25 bp)
AAGGTTACTTGCTGATCTGCTGGAA
LOC_Os01g47256
Os.13615.2.S1_at--872--11Chr01:27334737..27334761 (25 bp)
ATTGGTGGGTGATATTGAATTTCTC
LOC_Os01g47256
Os.13615.2.S1_at--950--5211Chr01:27334753..27334777 (25 bp)
GAATTTCTCAGATATATGGCGTGTG
LOC_Os01g47256
Os.13615.2.S1_at--425--871Chr01:27334768..27334792 (25 bp)
ATGGCGTGTGAAATTCCCCATCTGT
LOC_Os01g47256
Os.13615.2.S1_at--698--5571Chr01:27334777..27334801 (25 bp)
GAAATTCCCCATCTGTATAAACTAA
LOC_Os01g47256
Os.13615.2.S1_at--747--6871Chr01:27334791..27334815 (25 bp)
GTATAAACTAACATATCAGCTGAAC
LOC_Os01g47256
Os.13615.2.S1_at--1162--9631Chr01:27334806..27334830 (25 bp)
TCAGCTGAACTAGTACTTCTCAAAT
LOC_Os01g47256
Os.13615.2.S1_at--336--671Chr01:27334829..27334853 (25 bp)
ATGATAATTTAGCTCCCATCTTTAA
LOC_Os01g47256
Target Sequence 
GATGCGTTTTGATGTCTTATATATGAAGTTAACTGGATGATTCCGCTTATGAAACTTCATAGAGAGTTTTGTTCCAATCA
TACGTGATACGCTGGTTTGTAAGATGTCCTGGGATTTGCACAAGGTTACTTGCTGATCTGCTGGAAGATGATTGGTGGGT
GATATTGAATTTCTCAGATATATGGCGTGTGAAATTCCCCATCTGTATAAACTAACATATCAGCTGAACTAGTACTTCTC
AAATGATAATTTAGCTCCCATCTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13615.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis