Browse Element(s) Details


OsAffx.9196.2.S1_s_at

Description tigr:9629.m04534
TID=OsAffx.9196.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g472905/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47256Os.13615.2.S1_at11/111+27331109..27334886Exosome complex exonuclease RRP40, putative, expressed
LOC_Os01g47262OsAffx.11501.1.S1_at11/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.1.S1_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.4.S1_x_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262OsAffx.11501.1.S1_x_at10/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47262Os.13615.4.S1_at1/111+27335651..27338947Mov34/MPN/PAD-1 family protein, expressed
LOC_Os01g47270OsAffx.23697.1.S1_at11/111+27340681..27341796expressed protein
LOC_Os01g47270Os.41454.1.S1_s_at11/111+27340681..27341796expressed protein
LOC_Os01g47280Os.53332.1.S1_at11/111+27344773..27348483expressed protein
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.9196.2.S1_s_at--126--4271Chr01:27358967..27358991 (25 bp)
CCGGCGAGCTTCTATCATTAATGCT
LOC_Os01g47290
OsAffx.9196.2.S1_s_at--199--10111Chr01:27359101..27359125 (25 bp)
TATGGCTACTGCTTAGTGGTCGCCT
LOC_Os01g47290
OsAffx.9196.2.S1_s_at--244--811Chr01:27359142..27359166 (25 bp)
ATGGTGGCTGCCAAGGAGTCTACGA
LOC_Os01g47290
OsAffx.9196.2.S1_s_at--217--4091Chr01:27359164..27359188 (25 bp)
CGAGCGGATCTAAGCAGCGTGGCCA
LOC_Os01g47290
OsAffx.9196.2.S1_s_at--949--8451Chr01:27359183..27359207 (25 bp)
TGGCCAGCGAGCTTATGTCTCTAAT
LOC_Os01g47290
OsAffx.9196.2.S1_s_at--615--10531Chr01:27359234..27359258 (25 bp)
TTCTTGGTCCACAGCGGTAGCCGAG
NONE
OsAffx.9196.2.S1_s_at--780--3211Chr01:27359289..27359313 (25 bp)
CAAGTGGATCCAGGCGGCATGGTCA
NONE
OsAffx.9196.2.S1_s_at--716--8271Chr01:27359304..27359328 (25 bp)
GGCATGGTCAGCAATCTTTTGTCAT
NONE
OsAffx.9196.2.S1_s_at--121--8491Chr01:27359384..27359408 (25 bp)
TGGCAGCGAGCTTTGGGTCCATTAG
NONE
OsAffx.9196.2.S1_s_at--817--8471Chr01:27359423..27359447 (25 bp)
TGGCGAGCAGCGAGCAACAATGACT
NONE
OsAffx.9196.2.S1_s_at--309--8371Chr01:27359457..27359481 (25 bp)
GGCGATGACCAAGCAACAACCCTAT
NONE
Target Sequence 
CCGGCGAGCTTCTATCATTAATGCTTCATCATCACCTCATCTCCCCGCCTCGCACCCCATGGCAGTGGCCGAGAAGGCCA
CAGGCGCGAGCTTCGGGGCCGCAAGCGGATCTAGGTGGCATGCCACCAAGCTTCTATGGCTACTGCTTAGTGGTCGCCTT
CTCTCTTCCTGAGCCATGGTGGCTGCCAAGGAGTCTACGAGCGGATCTAAGCAGCGTGGCCAGCGAGCTTATGTCTCTAA
TGGTTCAACATTGCCTCCTCTTCCCTCTTCTTGGTCCACAGCGGTAGCCGAGGAGGATGCAGGCGACGAGCTTTAAGGCT
GGCAAGTGGATCCAGGCGGCATGGTCAGCAATCTTTTGTCATTGATGCTTCCTCCTCTCCCCTCTACCCCCGCCATGGTA
GCGGTCGAAGAAGCCGCTGGCAGCGAGCTTTGGGTCCATTAGGAAGTGGGCAGCGGTGGCGAGCAGCGAGCAACAATGAC
TAGTGCGGGAGGCGATGACCAAGCAACAACCCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.9196.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis