Browse Element(s) Details


OsAffx.21429.2.S1_at

Description tigr:9629.m04535
TID=OsAffx.21429.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4731010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47270OsAffx.23697.1.S1_at11/111+27340681..27341796expressed protein
LOC_Os01g47270Os.41454.1.S1_s_at11/111+27340681..27341796expressed protein
LOC_Os01g47280Os.53332.1.S1_at11/111+27344773..27348483expressed protein
LOC_Os01g47284NANA1+27350963..27352956hypothetical protein
LOC_Os01g47290OsAffx.9196.2.S1_s_at5/111+27358798..27359253hypothetical protein
LOC_Os01g47300Os.32597.1.S1_x_at11/111+27359926..27362613expressed protein
LOC_Os01g47300Os.32597.1.S1_at9/111+27359926..27362613expressed protein
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21429.2.S1_at--501--3871Chr01:27364515..27364539 (25 bp)
CTGATTCGCTTGGTAGGACTAGCTT
LOC_Os01g47310
OsAffx.21429.2.S1_at--690--6571Chr01:27364517..27364541 (25 bp)
GATTCGCTTGGTAGGACTAGCTTTC
LOC_Os01g47310
OsAffx.21429.2.S1_at--680--10631Chr01:27364519..27364543 (25 bp)
TTCGCTTGGTAGGACTAGCTTTCAT
LOC_Os01g47310
OsAffx.21429.2.S1_at--38--9351Chr01:27364520..27364544 (25 bp)
TCGCTTGGTAGGACTAGCTTTCATA
LOC_Os01g47310
OsAffx.21429.2.S1_at--507--4931Chr01:27364522..27364546 (25 bp)
GCTTGGTAGGACTAGCTTTCATAGT
LOC_Os01g47310
OsAffx.21429.2.S1_at--1161--10831Chr01:27364524..27364548 (25 bp)
TTGGTAGGACTAGCTTTCATAGTTA
LOC_Os01g47310
OsAffx.21429.2.S1_at--1086--6911Chr01:27364527..27364551 (25 bp)
GTAGGACTAGCTTTCATAGTTAAGT
LOC_Os01g47310
OsAffx.21429.2.S1_at--444--10011Chr01:27364534..27364558 (25 bp)
TAGCTTTCATAGTTAAGTGGTCAAA
LOC_Os01g47310
OsAffx.21429.2.S1_at--607--3571Chr01:27364541..27364565 (25 bp)
CATAGTTAAGTGGTCAAAGATATTA
LOC_Os01g47310
OsAffx.21429.2.S1_at--1152--1251Chr01:27364558..27364582 (25 bp)
AGATATTAGTATTGCAGTTGAGGGA
LOC_Os01g47310
OsAffx.21429.2.S1_at--969--1231NONE
AGTTGAGGGATACGCTGCTGAATCT
NONE
Target Sequence 
CTGATTCGCTTGGTAGGACTAGCTTTCATAGTTAAGTGGTCAAAGATATTAGTATTGCAGTTGAGGGATACGCTGCTGAA
TCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21429.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis