Browse Element(s) Details


Os.25270.1.A1_x_at

Description gb:CA760148
DB_XREF= gi:25804187
DB_XREF=BR060008B20A03.ab1
CLONE=BR060008B20A03.ab1
TID=Os.25270.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.25270 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_179759.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g473702/11RADIALIS, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47310OsAffx.21429.1.S1_s_at11/111+27364485..27365431hypothetical protein
LOC_Os01g47310OsAffx.21429.2.S1_at10/111+27364485..27365431hypothetical protein
LOC_Os01g47319OsAffx.25384.1.S1_at1/111+27367036..27367630NA
LOC_Os01g47330Os.7971.2.S1_s_at11/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47330Os.7971.1.S1_x_at9/111+27368723..2736949250S ribosomal protein L12-2, chloroplast precursor, putative, expressed
LOC_Os01g47340Os.17910.1.S1_a_at11/111+27374213..27377326NifU-like N-terminal domain containing protein, mitochondrial precursor, putative, expressed
LOC_Os01g47350Os.19161.1.S1_at11/111+27377697..27381445Naphthoate synthase, putative, expressed
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein
LOC_Os01g47390OsAffx.23699.1.S1_at11/111+27403376..27404388hypothetical protein
LOC_Os01g47400Os.10006.2.S1_x_at11/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47400Os.10006.1.S1_at10/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47410Os.13741.1.S1_s_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_x_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_at10/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.51743.1.S1_at1/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25270.1.A1_x_at--523--5151Chr01:27390964..27390987 (24 bp)
GCAACAGCAACAGTGTCAACATGGG
LOC_Os01g47370
Os.25270.1.A1_x_at--524--7091NONE
GTCAACATGGGCTCAGAGTGAGCAA
NONE
Os.25270.1.A1_x_at--567--3271NONE
CAACATGGGCTCAGAGTGAGCAAAA
NONE
Os.25270.1.A1_x_at--555--2111NONE
ACATGGGCTCAGAGTGAGCAAAAAG
NONE
Os.25270.1.A1_x_at--1061--5371NONE
GAAGCATTTGAGGTTCCCGACAACA
NONE
Os.25270.1.A1_x_at--826--3131NONE
AATTATATTCCCTGCTAGCTGTGGC
NONE
Os.25270.1.A1_x_at--712--3711Chr01:27389603..27389627 (25 bp)
CTAGCTGTGGCTAAGTTACTGAAGG
LOC_Os01g47370
Os.25270.1.A1_x_at--466--1411NONE
AGAAAAGCCTTGTTTGTACATACTT
NONE
Os.25270.1.A1_x_at--476--1491NONE
AGCAAATCAGTGTCGATTTTGCAGA
NONE
Os.25270.1.A1_x_at--817--7471NONE
GTGTGGTTGTTAAACCTTCCAGCTA
NONE
Os.25270.1.A1_x_at--668--6671NONE
GTTAAACCTTCCAGCTAAATTATGT
NONE
Target Sequence 
GCAACAGCAACAGTGTCAACATGGGCTCAGAGTGAGCAAAAAGGAGAACAAGCTGTTCGAGGAGGCTCTTGCCTAATACG
GCGAGGGTGCGCCTGACCTCTTTCACAAGGTGTCTCGCGCCATGGGAGGCACCAAGACAGCCGATGAGGTGTGCCGCCCC
TATGAGATCCTCGAGGGCGACCTCAAGCTGATAGAGGCAAGAAGAGTCCCGTTCCCCAAGTACAATACCCAGGGAGCATG
GAACTGATAGGGGTGGAAGCATTTGAGGTTCCCGACAACAGGAAAAAAATTCCCATATAAATTATATTCCCTGCTAGCTG
TGGCTAAGTTACTGAAGGAATCAAGGAAGTATATTGATATTGTTATTGCCTAAAAAGATTGTGGTCGCTTGGTTATAAAT
AAAAGAAGAAAAGCCTTGTTTGTACATACTTTAGGTTGTAAAGCAAATCAGTGTCGATTTTGCAGAAACTAGCCTGCCTT
TGGCATTGTGTGTGGTTGTTAAACCTTCCAGCTAAATTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25270.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis