Browse Element(s) Details


Os.10006.2.S1_x_at

Description gb:NM_192503.1
DB_XREF= gi:34912089
GEN=P0671D01.24
TID=Os.10006.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10006 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative mannan endo-1,4-beta-mannosidase (P0671D01.24), mRNA.
PROD=putative mannan endo-1,4-beta-mannosidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4740011/11mannan endo-1,4-beta-mannosidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g47360OsAffx.11504.1.S1_at11/111+27382808..27383697GATA zinc finger family protein
LOC_Os01g47370Os.25270.1.A1_x_at2/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47370OsAffx.21428.1.S1_at1/111+27389352..27391047RADIALIS, putative, expressed
LOC_Os01g47380OsAffx.11505.1.S1_at10/111+27394456..27395864hypothetical protein
LOC_Os01g47390OsAffx.23699.1.S1_at11/111+27403376..27404388hypothetical protein
LOC_Os01g47400Os.10006.2.S1_x_at11/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47400Os.10006.1.S1_at10/111+27408666..27412528mannan endo-1,4-beta-mannosidase, putative, expressed
LOC_Os01g47410Os.13741.1.S1_s_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_x_at11/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.50635.1.S1_at10/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47410Os.51743.1.S1_at1/111+27412593..27419085Aspartic proteinase oryzasin-1 precursor, putative, expressed
LOC_Os01g47420Os.17029.1.S1_at11/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47420OsAffx.21425.1.S1_at10/111+27422306..27427161pterin-4-alpha-carbinolamine dehydratase family protein, expressed
LOC_Os01g47430Os.14874.2.S1_x_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.1.S1_at11/111+27428979..27436834expressed protein
LOC_Os01g47430Os.14874.2.S1_at11/111+27428979..27436834expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10006.2.S1_x_at--935--5151Chr01:27411461..27411485 (25 bp)
GCAACCACATGCTGGAGGTCGGCCT
LOC_Os01g47400
Os.10006.2.S1_x_at--513--1791Chr01:27411613..27411757 (25 bp)
TACCCCGACCAATGGTTGTCGGGCA
LOC_Os01g47400
Os.10006.2.S1_x_at--305--8891Chr01:27411830..27411854 (25 bp)
TGAGGAAGCCGCTGCTGATCGCAGA
LOC_Os01g47400
Os.10006.2.S1_x_at--4--4751Chr01:27411843..27411867 (25 bp)
GCTGATCGCAGAGTTCGGCAAGTCG
LOC_Os01g47400
Os.10006.2.S1_x_at--462--5171Chr01:27411860..27411884 (25 bp)
GCAAGTCGTGGAAGGACCCGGGCTA
LOC_Os01g47400
Os.10006.2.S1_x_at--732--9531Chr01:27411908..27411932 (25 bp)
TCTACGGCACGGTGTACGCCAAGAT
LOC_Os01g47400
Os.10006.2.S1_x_at--204--1931Chr01:27411916..27411940 (25 bp)
ACGGTGTACGCCAAGATCTACGAGT
LOC_Os01g47400
Os.10006.2.S1_x_at--1100--4991Chr01:27411998..27412022 (25 bp)
GCATGGACTCGTACCGCGACGGCTA
LOC_Os01g47400
Os.10006.2.S1_x_at--67--9951Chr01:27412021..27412045 (25 bp)
TACGAGGTCGTCTTCGGTGAGACGC
LOC_Os01g47400
Os.10006.2.S1_x_at--73--7571Chr01:27412056..27412080 (25 bp)
GGGCGTCATCACCACGAACAGCCGG
LOC_Os01g47400
Os.10006.2.S1_x_at--456--3811Chr01:27412084..27412108 (25 bp)
CTGCGCTTCCTCAGCAAGGCGTTCG
LOC_Os01g47400
Target Sequence 
GCAACCACATGCTGGAGGTCGGCCTCGAGGGCTTCTACGGCGCCTCCTCGCCGTCCCGCATCGCCGCCGTCAACCCCTCC
GGCTACCAGCTCGGCACCGACTTCATCGCCAACAACCAGGTCCCCGGCATCGACTTCGCCACCGTCCACTCCTACCCCGA
CCAATGGTTGTCGGGCAAGGACGACCAGGCGCAGCTGGGGTTCATGGGGAGGTGGCTGGACGCGCACATCGCGGACGCGC
AGGCGGTGCTGAGGAAGCCGCTGCTGATCGCAGAGTTCGGCAAGTCGTGGAAGGACCCGGGCTACAGCAGCGGGCAGCGG
GACGCGCTCTACGGCACGGTGTACGCCAAGATCTACGAGTCGGCGCGGAGGGGCGGCGCCACGGTGGGGGGCCTCTTCTG
GCAGCTCCTGGTGCCCGGCATGGACTCGTACCGCGACGGCTACGAGGTCGTCTTCGGTGAGACGCCGTCCACCACGGGCG
TCATCACCACGAACAGCCGGCGGCTGCGCTTCCTCAGCAAGGCGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10006.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis