Browse Element(s) Details


Os.51743.1.S1_at

Description gb:AK063591.1
DB_XREF= gi:32973609
TID=Os.51743.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-A12, full insert sequence.
FL= gb:AK063591.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4272011/11TMS membrane family protein, putative, expressed
LOC_Os01g474101/11Aspartic proteinase oryzasin-1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42700Os.50861.1.S1_at11/114+25034712..25039323leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g42710NANA4+25044656..25046532retrotransposon protein, putative, unclassified
LOC_Os04g42720Os.51743.1.S1_at11/114+25061855..25066004TMS membrane family protein, putative, expressed
LOC_Os04g42730Os.46012.2.S1_x_at7/114+25068569..25074240retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42730Os.27088.1.A1_x_at5/114+25068569..25074240retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42730Os.46012.3.S1_x_at4/114+25068569..25074240retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42740OsAffx.26434.1.S1_at11/114+25078094..25080475D-mannose binding lectin family protein
LOC_Os04g42750OsAffx.1353.1.S1_x_at1/114+25083899..25085737transposon protein, putative, unclassified
LOC_Os04g42760Os.53077.1.S1_at11/114+25088049..25089515sialyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0016020cellular_componentmembrane
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51743.1.S1_at--491--3771Chr04:25063311..25063335 (25 bp)
CTCTCGTCTGGAATCATGGGCTTAT
LOC_Os04g42720
Os.51743.1.S1_at--498--7391Chr04:25062928..25062952 (25 bp)
GTGATGGCCACATTTTCTACTGGAA
LOC_Os04g42720
Os.51743.1.S1_at--150--1731Chr04:25062664..25062922 (25 bp)
ACCAGATCCTTCCAATTCCGAAATG
LOC_Os04g42720
Os.51743.1.S1_at--162--6231Chr04:25062619..25062643 (25 bp)
GATGTCCCCTACAGTTACGAGATTT
LOC_Os04g42720
Os.51743.1.S1_at--587--6051Chr04:25062601..25062625 (25 bp)
GAGATTTTCCACATTGTATTTGCAA
LOC_Os04g42720
Os.51743.1.S1_at--333--5871Chr04:25062573..25062597 (25 bp)
GAGCCATGTATTTTGCGATGCTGTT
LOC_Os04g42720
Os.51743.1.S1_at--312--6331Chr04:25062557..25062581 (25 bp)
GATGCTGTTCATCAACTGGGAACTT
LOC_Os04g42720
Os.51743.1.S1_at--787--1253Chr06:17029297..17029529 (25 bp)
AGATTGATCTCTCCAGTTATATTGA
NONE
Os.51743.1.S1_at--683--2991Chr04:25061949..25061973 (25 bp)
AATGAAGAGCTGGTGCCACGGACCC
LOC_Os04g42720
Os.51743.1.S1_at--556--1931Chr04:25061932..25061956 (25 bp)
ACGGACCCTCATAGTACAGTGTTCA
LOC_Os04g42720
Os.51743.1.S1_at--943--3611Chr04:25061895..25061919 (25 bp)
CTTCCTTCACACATTTTTCGATTCA
LOC_Os04g42720
Target Sequence 
CTCTCGTCTGGAATCATGGGCTTATATATTGTGTTCCTTTGTTGGTCGGCGCTCCACAGCGAACCACAAACTGGAAAGTG
CCATACTCGGCTGATATTTGCCAATGATGGTGATTGGGCTACCATTGTTAGCTTCATTATTGCAATTTGTGCCATTGTGA
TGGCCACATTTTCTACTGGAATCGACACCAGATCCTTCCAATTCCGAAATGACGAGGACCAATTGGAGGACGATGTCCCC
TACAGTTACGAGATTTTCCACATTGTATTTGCAATGGGAGCCATGTATTTTGCGATGCTGTTCATCAACTGGGAACTTAA
CCATCCAACGAGAAAGTGGAGCATAGATGTTGGATGGGTTAGTACATGGGTAAAGATCATCAATGAATGGTTTGCAGCTA
GCATATATGTTTGGAGATTGATCTCTCCAGTTATATTGAGGAAGCAAGCTGCCAATAATGAAGAGCTGGTGCCACGGACC
CTCATAGTACAGTGTTCAAGATAGCTAATTCTTCCTTCACACATTTTTCGATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis