Browse Element(s) Details


Os.53077.1.S1_at

Description gb:AK070719.1
DB_XREF= gi:32980743
TID=Os.53077.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53077 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058L14, full insert sequence.
FL= gb:AK070719.1 gb:AK104762.1 gb:AK104647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4276011/11sialyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42720Os.51743.1.S1_at11/114+25061855..25066004TMS membrane family protein, putative, expressed
LOC_Os04g42730Os.46012.2.S1_x_at7/114+25068569..25074240retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42730Os.27088.1.A1_x_at5/114+25068569..25074240retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42730Os.46012.3.S1_x_at4/114+25068569..25074240retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g42740OsAffx.26434.1.S1_at11/114+25078094..25080475D-mannose binding lectin family protein
LOC_Os04g42750OsAffx.1353.1.S1_x_at1/114+25083899..25085737transposon protein, putative, unclassified
LOC_Os04g42760Os.53077.1.S1_at11/114+25088049..25089515sialyltransferase, putative, expressed
LOC_Os04g42770Os.47741.1.S1_x_at11/114+25095177..25101346expressed protein
LOC_Os04g42770Os.47741.2.S1_at10/114+25095177..25101346expressed protein
LOC_Os04g42784Os.49455.1.S1_at11/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.14245.1.S1_x_at10/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784Os.56006.1.S1_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.21705.1.S1_x_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0008373molecular_functionsialyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53077.1.S1_at--672--1871Chr04:25089002..25089026 (25 bp)
ACGAGGAAGGCATGTTCCACTACTC
LOC_Os04g42760
Os.53077.1.S1_at--276--2571Chr04:25089131..25089155 (25 bp)
AACGGCGCGAGCTGGACCTTCACGA
LOC_Os04g42760
Os.53077.1.S1_at--1085--6051Chr04:25089172..25089196 (25 bp)
GAGTTCTACCGTGACCTCGAGTCGC
LOC_Os04g42760
Os.53077.1.S1_at--1025--1791Chr04:25089286..25089310 (25 bp)
ACCCCGCAAACGCATAGCATGCATA
LOC_Os04g42760
Os.53077.1.S1_at--428--1271Chr04:25089329..25089353 (25 bp)
AGATACGTGTTTTAGTCATTGCAAC
LOC_Os04g42760
Os.53077.1.S1_at--40--3031Chr04:25089377..25089401 (25 bp)
AATCCGTGAACATTTGGGTCGTGAA
LOC_Os04g42760
Os.53077.1.S1_at--1097--8612Chr04:25089391..25089415 (25 bp)
TGGGTCGTGAACTCGTGATCAGCTC
LOC_Os04g42760
Os.53077.1.S1_at--928--431Chr04:25089420..25089444 (25 bp)
ATCTTTTGCCGTGCTTTGGCTGCAA
LOC_Os04g42760
Os.53077.1.S1_at--765--10851Chr04:25089435..25089459 (25 bp)
TTGGCTGCAACGACATTGGCTTTGT
LOC_Os04g42760
Os.53077.1.S1_at--240--4411Chr04:25089471..25089495 (25 bp)
GCCACGATACTTTCGTTAGCCTCGA
LOC_Os04g42760
Os.53077.1.S1_at--672--10291Chr04:25089481..25089505 (25 bp)
TTTCGTTAGCCTCGATGGCGCGCAA
LOC_Os04g42760
Target Sequence 
ACGAGGAAGGCATGTTCCACTACTCGTCGGGGATGCAGGCGGTGGTGGCCGCGGCGGGCGTGTGCGACCGCGTGTCGGTG
TTCGGGTTCGGCAAGGACGCGTCGGCGCGGCACCACTACCACACGCTGCAACGGCGCGAGCTGGACCTTCACGACTACGA
GGCGGAGTACGAGTTCTACCGTGACCTCGAGTCGCGGCCCGAGGCGATACCCTTCCTGCGCCAACGCAACTCCGGCTTCC
GCCTGCCGCCCGTGTCGTTCTACCGCTGACACGCCACGCACGCAACCCCGCAAACGCATAGCATGCATAAAATTCTTTTT
TGTAATTAGATACGTGTTTTAGTCATTGCAACAAAGCGAAGCAAACGTAAACAACAATCCGTGAACATTTGGGTCGTGAA
CTCGTGATCAGCTCGCTNATCTTTTGCCGTGCTTTGGCTGCAACGACATTGGCTTTGTTTGCGACGACNGCCACGATACT
TTCGTTAGCCTCGATGGCGCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53077.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis