Browse Element(s) Details


Os.50861.1.S1_at

Description gb:AK059053.1
DB_XREF= gi:32969071
TID=Os.50861.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50861 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E12, full insert sequence.
FL= gb:AK059053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4270011/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42650Os.50505.2.S1_at11/114+25013340..25015569expressed protein
LOC_Os04g42670Os.49610.1.S1_at11/114+25025431..25027439F-box domain containing protein, expressed
LOC_Os04g42680OsAffx.14244.1.S1_at10/114+25030836..25032080hypothetical protein
LOC_Os04g42690Os.20755.1.S1_at11/114+25032328..25034055UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g42700Os.50861.1.S1_at11/114+25034712..25039323leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os04g42710NANA4+25044656..25046532retrotransposon protein, putative, unclassified
LOC_Os04g42720Os.51743.1.S1_at11/114+25061855..25066004TMS membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50861.1.S1_at--651--2891Chr04:25035460..25035484 (25 bp)
AAGGTGATAGACATGCCATACTCAA
LOC_Os04g42700
Os.50861.1.S1_at--543--5671Chr04:25035184..25035208 (25 bp)
GACATATACAGTTACGGCGTCGTAC
LOC_Os04g42700
Os.50861.1.S1_at--240--1991Chr04:25035161..25035185 (25 bp)
ACTGCTGGAGCTGCTAACCGGACGT
LOC_Os04g42700
Os.50861.1.S1_at--40--9171Chr04:25035137..25035161 (25 bp)
TGCCCCTGTACAACCATTAGAACTG
LOC_Os04g42700
Os.50861.1.S1_at--596--5451Chr04:25035118..25035142 (25 bp)
GAACTGGGAGGTGATCTGGTAACAT
LOC_Os04g42700
Os.50861.1.S1_at--142--3171Chr04:25035071..25035095 (25 bp)
CAATTCTTTGGGTCCAGGGATTCTT
LOC_Os04g42700
Os.50861.1.S1_at--384--2431Chr04:25035022..25035046 (25 bp)
AAAACGTCTGTCGATCATATGATTG
LOC_Os04g42700
Os.50861.1.S1_at--467--71Chr04:25034981..25035005 (25 bp)
ATTGCTATGTACTAGTATGTCTCCA
LOC_Os04g42700
Os.50861.1.S1_at--176--8731Chr04:25034964..25034988 (25 bp)
TGTCTCCATATGACAGACCACCGAT
LOC_Os04g42700
Os.50861.1.S1_at--1030--3351Chr04:25034946..25034970 (25 bp)
CACCGATGCGGAATGTTGTAGTTAT
LOC_Os04g42700
Os.50861.1.S1_at--415--271Chr04:25034827..25034851 (25 bp)
ATATGTTCTAGTCAGGGCAATGCCC
LOC_Os04g42700
Target Sequence 
AAGGTGATAGACATGCCATACTCAAAATCAATGTCTGCAATTGCTGGTTCATATGGATATATAGCACCTGAATATGCATA
CACCATGAAGGTTACTGAAAAAAGTGACATATACAGTTACGGCGTCGTACTGCTGGAGCTGCTAACCGGACGTGCCCCTG
TACAACCATTAGAACTGGGAGGTGATCTGGTAACATGGGTAAAGAATTACATCAGGGACAATTCTTTGGGTCCAGGGATT
CTTGATAAGAATCTGAATTTGGAAGACAAAACGTCTGTCGATCATATGATTGAGGTCTTGAAAATTGCATTGCTATGTAC
TAGTATGTCTCCATATGACAGACCACCGATGCGGAATGTTGTAGTTATGTTAAGTGAGTCTAGAGATAGGGCCAGGATGA
GCTCTTCATCCTCGCCTGCTTCTGATCATTCTTCAAAGAAGGATAACTTATGATGTATTTATATATGTTCTAGTCAGGGC
AATGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis