Browse Element(s) Details


Os.50505.2.S1_at

Description gb:AK063930.1
DB_XREF= gi:32973948
TID=Os.50505.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50505 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-D02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-D02, full insert sequence.
FL= gb:AK063930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4265011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42610Os.8398.1.S1_a_at11/114+24988714..24994819expressed protein
LOC_Os04g42620Os.15713.1.S1_a_at11/114+24998777..25000582Leucine Rich Repeat family protein, expressed
LOC_Os04g42634OsAffx.4060.1.S1_at11/114+25006094..25009700hypothetical protein
LOC_Os04g42634OsAffx.4061.1.S1_at10/114+25006094..25009700hypothetical protein
LOC_Os04g42634Os.25318.1.A1_at9/114+25006094..25009700hypothetical protein
LOC_Os04g42650Os.50505.2.S1_at11/114+25013340..25015569expressed protein
LOC_Os04g42670Os.49610.1.S1_at11/114+25025431..25027439F-box domain containing protein, expressed
LOC_Os04g42680OsAffx.14244.1.S1_at10/114+25030836..25032080hypothetical protein
LOC_Os04g42690Os.20755.1.S1_at11/114+25032328..25034055UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g42700Os.50861.1.S1_at11/114+25034712..25039323leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50505.2.S1_at--425--4971Chr04:25013887..25013911 (25 bp)
GCATCATCGAGCACTGGCTGGGCAG
LOC_Os04g42650
Os.50505.2.S1_at--814--9551Chr04:25013842..25013866 (25 bp)
TCTTCAACCGGCTGTGCCAGGAGGT
LOC_Os04g42650
Os.50505.2.S1_at--330--2131Chr04:25013767..25013791 (25 bp)
ACAGGTACTACGACCACAAGTGGAG
LOC_Os04g42650
Os.50505.2.S1_at--440--2231Chr04:25013752..25013776 (25 bp)
ACAAGTGGAGCACCTGGATCGCCAG
LOC_Os04g42650
Os.50505.2.S1_at--226--1691Chr04:25013729..25013753 (25 bp)
AGCCTCAAGCACAACTACTTCAGCA
LOC_Os04g42650
Os.50505.2.S1_at--247--10571Chr04:25013639..25013663 (25 bp)
TTCTACGGCACCTACAGCTACTACA
LOC_Os04g42650
Os.50505.2.S1_at--558--891Chr04:25013615..25013639 (25 bp)
AGGCCGATGCATTGATCCGCACAAA
LOC_Os04g42650
Os.50505.2.S1_at--117--7591Chr04:25013584..25013608 (25 bp)
GGGCTCGAGGCAATCCAAAATTTGA
LOC_Os04g42650
Os.50505.2.S1_at--217--6871Chr04:25013543..25013567 (25 bp)
GTTTGGCATTGTGCGATAGGCATCA
LOC_Os04g42650
Os.50505.2.S1_at--830--3911Chr04:25013486..25013510 (25 bp)
CTGGCTTTGCAATTACAGCTTTGAT
LOC_Os04g42650
Os.50505.2.S1_at--1049--10671Chr04:25013450..25013474 (25 bp)
TTCCTTGGACTTCGGAGTGCGTTGT
LOC_Os04g42650
Target Sequence 
GCATCATCGAGCACTGGCTGGGCAGCGACGCCGAGGTGGCCGACCTCTTCAACCGGCTGTGCCAGGAGGTGGTGTTCGAC
ATCAACGACAGCTACCTCTCGGGGCTCTCGGACCAGGTGAACAGGTACTACGACCACAAGTGGAGCACCTGGATCGCCAG
CCTCAAGCACAACTACTTCAGCAACCCATGGGCGATCGTCTCGGTGGTCGCCGGTGTCTTGTTGCTGCTGCTCACCATGA
CGCAGACCTTCTACGGCACCTACAGCTACTACAGGCCGATGCATTGATCCGCACAAAATGCAGGGGCTCGAGGCAATCCA
AAATTTGATATTTTTATTTTTTGGGTTTGGCATTGTGCGATAGGCATCAAGTTTAGCTGATTTTGTGACAGCGTGAGATT
GCTGGCTTTGCAATTACAGCTTTGATGGGGAGAATTCTTCCTTGGACTTCGGAGTGCGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50505.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis