Browse Element(s) Details


Os.8398.1.S1_a_at

Description gb:AK060812.1
DB_XREF= gi:32970830
TID=Os.8398.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013022C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-H03, full insert sequence.
FL= gb:AK060812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4261011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42570OsAffx.4058.1.S1_x_at11/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42570OsAffx.23957.2.S1_x_at1/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42570Os.55217.1.S1_at1/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42580Os.7025.1.S1_s_at11/114+24968781..24972481carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed
LOC_Os04g42590Os.52657.1.S1_at11/114+24972383..24973850expressed protein
LOC_Os04g42590OsAffx.23890.4.S1_x_at1/114+24972383..24973850expressed protein
LOC_Os04g42600Os.38233.1.S2_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S1_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S2_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42610Os.8398.1.S1_a_at11/114+24988714..24994819expressed protein
LOC_Os04g42620Os.15713.1.S1_a_at11/114+24998777..25000582Leucine Rich Repeat family protein, expressed
LOC_Os04g42634OsAffx.4060.1.S1_at11/114+25006094..25009700hypothetical protein
LOC_Os04g42634OsAffx.4061.1.S1_at10/114+25006094..25009700hypothetical protein
LOC_Os04g42634Os.25318.1.A1_at9/114+25006094..25009700hypothetical protein
LOC_Os04g42650Os.50505.2.S1_at11/114+25013340..25015569expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8398.1.S1_a_at--716--5571Chr04:24994265..24994289 (25 bp)
GAAAGTCTGATAACTTGCACCTGTT
LOC_Os04g42610
Os.8398.1.S1_a_at--327--8072Chr05:29023399..29023754 (25 bp)
GGAGCAAGATGTTGGCACTGGCCAT
NONE
Os.8398.1.S1_a_at--155--831Chr04:24994424..24994448 (25 bp)
ATGGTTCAACACAAATCGCTCCTCG
LOC_Os04g42610
Os.8398.1.S1_a_at--344--4411Chr04:24994467..24994491 (25 bp)
GCCACTAACCACTGTTTCTGTTGAT
LOC_Os04g42610
Os.8398.1.S1_a_at--67--351Chr04:24994560..24994584 (25 bp)
ATAAAACAGCTCCTTGGCTGCTAGC
LOC_Os04g42610
Os.8398.1.S1_a_at--659--4851Chr04:24994587..24994611 (25 bp)
GCTACGCTCCTCTGATTAAGTTGTT
LOC_Os04g42610
Os.8398.1.S1_a_at--267--7311Chr04:24994625..24994649 (25 bp)
GTGCTGGAGCTTGTTCTTCTAAGTT
LOC_Os04g42610
Os.8398.1.S1_a_at--873--6731Chr04:24994637..24994661 (25 bp)
GTTCTTCTAAGTTATTCCGATCCCA
LOC_Os04g42610
Os.8398.1.S1_a_at--791--71Chr04:24994650..24994674 (25 bp)
ATTCCGATCCCATGTCCAATAAGAG
LOC_Os04g42610
Os.8398.1.S1_a_at--695--7131Chr04:24994715..24994739 (25 bp)
GTCATATGTGTTGCGACGTGATCAA
LOC_Os04g42610
Os.8398.1.S1_a_at--1037--2271Chr04:24994755..24994779 (25 bp)
AAATCCTGTTCCAGACATATGCATA
LOC_Os04g42610
Target Sequence 
GAAAGTCTGATAACTTGCACCTGTTAGTTGCAAATCAGAATTTTAGTTCTCCCCCATCCATAGAAGCAGCATGCAAGAAA
GAGAACGATGAACGTGTTACAACTGAAAAGAACCTTCTACAGGAGCAAGATGTTGGCACTGGCCATAAAGTTGATAACAA
TGGTTCAACACAAATCGCTCCTCGTCCCGTGATCCCCAAGTCGCCACTAACCACTGTTTCTGTTGATATGAAGAAGAGGA
AGAAAAAGAAGCAGGGTGGGAGCTTGCTGAGTAGACTCATCTTTGGGAAGAAGGCATAAAACAGCTCCTTGGCTGCTAGC
CTGCTACGCTCCTCTGATTAAGTTGTTAGTGCATCCAGCANGTGCTGGAGCTTGTTCTTCTAAGTTATTCCGATCCCATG
TCCAATAAGAGGGGGCAATGCTACGTAGCTAAAATATAATTTATCGGTTATGTCATATGTGTTGCGACGTGATCAACNAC
TATATGTTTGTAAAATCCTGTTCCAGACATATGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8398.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis