Browse Element(s) Details


Os.38233.1.S2_at

Description gb:AK067210.1
DB_XREF= gi:32977228
TID=Os.38233.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.38233 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096J03, full insert sequence.
FL= gb:AK067210.1 gb:AK104208.1 gb:AK064269.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4260011/11Polyadenylate-binding protein 2, putative, expressed
LOC_Os05g033201/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42520Os.7457.1.S1_a_at11/114+24946595..24951654Adenine phosphoribosyltransferase 2, putative, expressed
LOC_Os04g42530OsAffx.4057.1.S1_at11/114+24955169..24955534hypothetical protein
LOC_Os04g42540Os.5770.1.S1_at11/114+24955687..24956651expressed protein
LOC_Os04g42550OsAffx.26431.1.S1_at11/114+24959247..24959735hypothetical protein
LOC_Os04g42560OsAffx.28660.1.S1_at1/114+24960766..24961059hypothetical protein
LOC_Os04g42560OsAffx.28660.1.S1_x_at1/114+24960766..24961059hypothetical protein
LOC_Os04g42570OsAffx.4058.1.S1_x_at11/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42570OsAffx.23957.2.S1_x_at1/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42570Os.55217.1.S1_at1/114+24963397..24967270AP2 domain containing protein
LOC_Os04g42580Os.7025.1.S1_s_at11/114+24968781..24972481carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed
LOC_Os04g42590Os.52657.1.S1_at11/114+24972383..24973850expressed protein
LOC_Os04g42590OsAffx.23890.4.S1_x_at1/114+24972383..24973850expressed protein
LOC_Os04g42600Os.38233.1.S2_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S1_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42600Os.38233.1.S2_s_at11/114+24974933..24982124Polyadenylate-binding protein 2, putative, expressed
LOC_Os04g42610Os.8398.1.S1_a_at11/114+24988714..24994819expressed protein
LOC_Os04g42620Os.15713.1.S1_a_at11/114+24998777..25000582Leucine Rich Repeat family protein, expressed
LOC_Os04g42634OsAffx.4060.1.S1_at11/114+25006094..25009700hypothetical protein
LOC_Os04g42634OsAffx.4061.1.S1_at10/114+25006094..25009700hypothetical protein
LOC_Os04g42634Os.25318.1.A1_at9/114+25006094..25009700hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000289biological_processpoly(A) tail shortening
GO:0006397biological_processmRNA processing
GO:0006413biological_processtranslational initiation
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
GO:0008143molecular_functionpoly(A) binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38233.1.S2_at--262--8951Chr04:24975844..24975868 (25 bp)
TGCCATTAAGGCCAGGTACTTGTTT
LOC_Os04g42600
Os.38233.1.S2_at--423--3591Chr04:24975841..24975865 (25 bp)
CATTAAGGCCAGGTACTTGTTTCCA
LOC_Os04g42600
Os.38233.1.S2_at--355--9771Chr04:24975838..24975862 (25 bp)
TAAGGCCAGGTACTTGTTTCCAAGT
LOC_Os04g42600
Os.38233.1.S2_at--891--4391Chr04:24975834..24975858 (25 bp)
GCCAGGTACTTGTTTCCAAGTTTGA
LOC_Os04g42600
Os.38233.1.S2_at--265--4351Chr04:24975819..24975843 (25 bp)
CCAAGTTTGAGTATTATCCGGACCA
LOC_Os04g42600
Os.38233.1.S2_at--368--6851Chr04:24975815..24975839 (25 bp)
GTTTGAGTATTATCCGGACCATCCG
LOC_Os04g42600
Os.38233.1.S2_at--968--6071Chr04:24975811..24975835 (25 bp)
GAGTATTATCCGGACCATCCGTCAC
LOC_Os04g42600
Os.38233.1.S2_at--837--10191Chr04:24975808..24975832 (25 bp)
TATTATCCGGACCATCCGTCACATA
LOC_Os04g42600
Os.38233.1.S2_at--641--8091Chr04:24975800..24975824 (25 bp)
GGACCATCCGTCACATACCTCTTAT
LOC_Os04g42600
Os.38233.1.S2_at--543--311Chr04:24975786..24975810 (25 bp)
ATACCTCTTATGCTTGATCACAATT
LOC_Os04g42600
Os.38233.1.S2_at--926--4292Chr05:1328646..1328668 (22 bp)
CCTCTTATGCTTGATCACAATTTTT
LOC_Os05g03320
Target Sequence 
TGCCATTAAGGCCAGGTACTTGTTTCCAAGTTTGAGTATTATCCGGACCATCCGTCACATACCTCTTATGCTTGATCACA
ATTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38233.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis