Browse Element(s) Details


OsAffx.23957.2.S1_x_at

Description tigr:9630.m03865
TID=OsAffx.23957.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4007011/11AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os04g425701/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40030Os.10776.1.S1_at11/112+24229799..24233912UDP-sugar transporter sqv-7, putative, expressed
LOC_Os02g40040Os.17597.1.S1_at11/112+24234223..24236689expressed protein
LOC_Os02g40050NANA2+24248435..24249157retrotransposon protein, putative, unclassified
LOC_Os02g40060NANA2+24250189..24251586retrotransposon protein, putative, unclassified
LOC_Os02g40070Os.49859.1.S1_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40070OsAffx.23957.2.S1_x_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40080Os.6402.1.S1_at11/112+24262282..24264132Tic20, putative, expressed
LOC_Os02g40090Os.8898.1.S1_s_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40090Os.34876.1.S1_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40100Os.14160.1.S1_at11/112+24270631..24275141expressed protein
LOC_Os02g40110OsAffx.24657.1.S1_at11/112+24277094..24278935expressed protein
LOC_Os02g40120OsAffx.12423.1.S1_at11/112+24282950..24283772hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23957.2.S1_x_at--843--7991Chr02:24259555..24259579 (25 bp)
GGATGGGCGCCTACGCCGCCTCGTA
LOC_Os02g40070
OsAffx.23957.2.S1_x_at--2--3312Chr04:24966956..24967143 (25 bp)
CACAACTTCTTCCAGGCGTCGTCGA
LOC_Os04g42570
OsAffx.23957.2.S1_x_at--769--10552Chr02:24259782..24259806 (25 bp)
TTCTTCCAGGCGTCGTCGAGCTCGA
LOC_Os02g40070
OsAffx.23957.2.S1_x_at--337--1591Chr02:24259800..24259824 (25 bp)
AGCTCGACGGTCTACAACGGCGGCG
LOC_Os02g40070
OsAffx.23957.2.S1_x_at--364--7731Chr02:24259845..24259869 (25 bp)
GGTGGCAACGCCTTCTTGATGCCGG
LOC_Os02g40070
OsAffx.23957.2.S1_x_at--1162--3614Chr07:29687686..29687836 (24 bp)
CTTGATGCCGGCGAGCACCGTCGTG
NONE
OsAffx.23957.2.S1_x_at--737--1511Chr02:24259899..24259923 (25 bp)
AGCAGCACGGCCACCAACCATGGAA
LOC_Os02g40070
OsAffx.23957.2.S1_x_at--188--2651Chr02:24259914..24259938 (25 bp)
AACCATGGAAACACCTGCAGCTACG
LOC_Os02g40070
OsAffx.23957.2.S1_x_at--975--2151Chr02:24259924..24259948 (25 bp)
ACACCTGCAGCTACGGCAACGAGGA
LOC_Os02g40070
OsAffx.23957.2.S1_x_at--84--5411Chr02:24259955..24259979 (25 bp)
GAAGCTCATCGGGTACGACGCCATG
LOC_Os02g40070
OsAffx.23957.2.S1_x_at--694--1711Chr02:24260011..24260035 (25 bp)
ACCAGCTGTCGCAGGGCTCGGCGTC
LOC_Os02g40070
Target Sequence 
GGATGGGCGCCTACGCCGCCTCGTACCACCACCACCACCACCACGGCTGGCCGACCATCGCGTTCCAGCAGCCGCCGCCG
CTCGCCGTGCACTACCCGTACGGCCAGGCGCCGGCGGCGCCGTCGCGCGGGTGGTGCAAGCCCGAGCAGGACGCCGCCGT
CGCTGCCGCCGCGCACAGCCTCCAGGACCTCCAGCAGCTGCACCTCGGCAGCGCCGCCGCCCACAACTTCTTCCAGGCGT
CGTCGAGCTCGACGGTCTACAACGGCGGCGGCGGCGGGTACCAGGGCCTCGGTGGCAACGCCTTCTTGATGCCGGCGAGC
ACCGTCGTGGCCGACCAGGGGCACAGCAGCACGGCCACCAACCATGGAAACACCTGCAGCTACGGCAACGAGGAGCAGGG
GAAGCTCATCGGGTACGACGCCATGGCGATGGCGAGCGGCGCCGCCGGCGGCGGGTACCAGCTGTCGCAGGGCTCGGCGT
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23957.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis