Browse Element(s) Details


Os.6402.1.S1_at

Description gb:AK071805.1
DB_XREF= gi:32981828
TID=Os.6402.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6402 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023108N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023108N22, full insert sequence.
FL= gb:AK071805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4008011/11Tic20, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40050NANA2+24248435..24249157retrotransposon protein, putative, unclassified
LOC_Os02g40060NANA2+24250189..24251586retrotransposon protein, putative, unclassified
LOC_Os02g40070Os.49859.1.S1_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40070OsAffx.23957.2.S1_x_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40080Os.6402.1.S1_at11/112+24262282..24264132Tic20, putative, expressed
LOC_Os02g40090Os.8898.1.S1_s_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40090Os.34876.1.S1_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40100Os.14160.1.S1_at11/112+24270631..24275141expressed protein
LOC_Os02g40110OsAffx.24657.1.S1_at11/112+24277094..24278935expressed protein
LOC_Os02g40120OsAffx.12423.1.S1_at11/112+24282950..24283772hypothetical protein
LOC_Os02g40130OsAffx.24658.1.S1_at11/112+24287266..24288090Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6402.1.S1_at--742--2691Chr02:24263544..24263568 (25 bp)
AAGCTCTGGCGACCATGTGCAACTG
LOC_Os02g40080
Os.6402.1.S1_at--497--6811Chr02:24263605..24263629 (25 bp)
GTTTTTCTGGATGACGATTGCCTTC
LOC_Os02g40080
Os.6402.1.S1_at--717--71Chr02:24263621..24263645 (25 bp)
ATTGCCTTCATTCAGATATCCACAG
LOC_Os02g40080
Os.6402.1.S1_at--782--8691Chr02:24263663..24263687 (25 bp)
TGTGCTCTGGCAGGCATGTATCCCA
LOC_Os02g40080
Os.6402.1.S1_at--43--6911Chr02:24263680..24263704 (25 bp)
GTATCCCAGCGTTCCGTTTGTATCT
LOC_Os02g40080
Os.6402.1.S1_at--1125--10791Chr02:24263697..24263721 (25 bp)
TTGTATCTCAAACGGCTTTCATCCA
LOC_Os02g40080
Os.6402.1.S1_at--545--3931Chr02:24263709..24263733 (25 bp)
CGGCTTTCATCCACTCTGATATGAG
LOC_Os02g40080
Os.6402.1.S1_at--568--4891Chr02:24263891..24263915 (25 bp)
GCTTATTTGCAGTGTTGGCACTTCT
LOC_Os02g40080
Os.6402.1.S1_at--100--8251Chr02:24263907..24263931 (25 bp)
GGCACTTCTAATATTTGTGGCCTGG
LOC_Os02g40080
Os.6402.1.S1_at--222--7391Chr02:24264001..24264025 (25 bp)
GTGAGTTCAGTTTTATAGCCCTGGA
LOC_Os02g40080
Os.6402.1.S1_at--142--10351Chr02:24264042..24264066 (25 bp)
TTTATCCTTGGAGGCGCCCTTGAAA
LOC_Os02g40080
Target Sequence 
AAGCTCTGGCGACCATGTGCAACTGGAATCCAAGCATTGTTTATCAGGGTAAACCAATGGTGTTTTTCTGGATGACGATT
GCCTTCATTCAGATATCCACAGTTCTTGAGTGCATGAGGTGTGCTCTGGCAGGCATGTATCCCAGCGTTCCGTTTGTATC
TCAAACGGCTTTCATCCACTCTGATATGAGTATGTTCAGGTAGTTGGTTAGTGCAATATGCATCTTTGAATATAAGAAGC
ATTAAGGGATTTTTATACGAGAGATTTGAAAACTGCTGAGACAGTAAAATGTTGGGAATTATGAGATACAAGAGGTGGGG
ATGCAAGGGGATGAAATCAGAGGCAATGCTTATTTGCAGTGTTGGCACTTCTAATATTTGTGGCCTGGAGAGTTACTTGA
TATATTGTTTAGGTTGTGTTTTGTTTGATTTTGAATAGGATGACCATTTTGAAGACTGTGAGTTCAGTTTTATAGCCCTG
GAATTTTCTTTTTTNATTTTTATCCTTGGAGGCGCCCTTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis