Browse Element(s) Details


OsAffx.12423.1.S1_at

Description tigr:9630.m03872
TID=OsAffx.12423.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4012011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40070Os.49859.1.S1_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40070OsAffx.23957.2.S1_x_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40080Os.6402.1.S1_at11/112+24262282..24264132Tic20, putative, expressed
LOC_Os02g40090Os.8898.1.S1_s_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40090Os.34876.1.S1_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40100Os.14160.1.S1_at11/112+24270631..24275141expressed protein
LOC_Os02g40110OsAffx.24657.1.S1_at11/112+24277094..24278935expressed protein
LOC_Os02g40120OsAffx.12423.1.S1_at11/112+24282950..24283772hypothetical protein
LOC_Os02g40130OsAffx.24658.1.S1_at11/112+24287266..24288090Leucine Rich Repeat family protein, expressed
LOC_Os02g40140NANA2+24294057..24296421transposon protein, putative, unclassified
LOC_Os02g40150NANA2+24299498..24300291hypothetical protein
LOC_Os02g40160NANA2+24301479..24302840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40170NANA2+24305957..24306750hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12423.1.S1_at--1049--10431Chr02:24283604..24283627 (24 bp)
TTAGCAACATTTTTCCAGGGCGCCG
LOC_Os02g40120
OsAffx.12423.1.S1_at--1084--6051Chr02:24283580..24283604 (25 bp)
GAGTTCGACCTGTCAAGGCTCTGGG
LOC_Os02g40120
OsAffx.12423.1.S1_at--963--2931Chr02:24283566..24283590 (25 bp)
AAGGCTCTGGGTTATGCGTCCGTCA
LOC_Os02g40120
OsAffx.12423.1.S1_at--817--9651Chr02:24283538..24283562 (25 bp)
TCAGACGCGCGCTCTGGGTTCATGT
LOC_Os02g40120
OsAffx.12423.1.S1_at--43--4091Chr02:24283366..24283390 (25 bp)
CGACAAGCAGTTCTTCGCCGAGCTA
LOC_Os02g40120
OsAffx.12423.1.S1_at--719--5691Chr02:24283332..24283356 (25 bp)
GACTACGACTCTGCGACCGTTGTGA
LOC_Os02g40120
OsAffx.12423.1.S1_at--83--9831Chr02:24283103..24283127 (25 bp)
TAAACCGCACGGCTACAAGACGAAG
LOC_Os02g40120
OsAffx.12423.1.S1_at--11--5331Chr02:24283082..24283106 (25 bp)
GAAGTGTGAATTTTGCCCCGCCAGC
LOC_Os02g40120
OsAffx.12423.1.S1_at--1005--4851Chr02:24283059..24283083 (25 bp)
GCTATGGGATTTTGCACCCGGGCGA
LOC_Os02g40120
OsAffx.12423.1.S1_at--720--7991Chr02:24283001..24283025 (25 bp)
GGATGAGTTCTTCCTGTTGCGGAAT
LOC_Os02g40120
OsAffx.12423.1.S1_at--86--6691Chr02:24282986..24283010 (25 bp)
GTTGCGGAATCGACTTCTGAGTTCT
LOC_Os02g40120
Target Sequence 
TTAGCAACATTTTTCCAGGGCGCCGAGTTCGACCTGTCAAGGCTCTGGGTTATGCGTCCGTCAGCTTCAGACGCGCGCTC
TGGGTTCATGTCAGCTTCCTGGCTCGCAGGAGGAGCAGCCCGGTGAAGCCAGCCGATGAAGCAGCAGCTGCTGCTGCCGA
TGATGACGAATCCGACGTGAAAAGAGGCCGCAAGCGACGCTCCCGCAACAAGCGCAACAGGGCTCCTCCCGAGTCACCCG
ACAAGCAGTTCTTCGCCGAGCTACGCTACGACGACTACGACTCTGCGACCGTTGTGACCTGCACCATCATCGATAAGAGT
AAACCGCACGGCTACAAGACGAAGTGTGAATTTTGCCCCGCCAGCTATGGGATTTTGCACCCGGGCGACGGGAAATTTGT
GTGCGGGAAGAGGAACCAGAGGGATGAGTTCTTCCTGTTGCGGAATCGACTTCTGAGTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis