Browse Element(s) Details


OsAffx.24657.1.S1_at

Description tigr:9630.m03871
TID=OsAffx.24657.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4011011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40070Os.49859.1.S1_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40070OsAffx.23957.2.S1_x_at11/112+24255807..24260428AP2/EREBP transcription factor BABY BOOM, putative, expressed
LOC_Os02g40080Os.6402.1.S1_at11/112+24262282..24264132Tic20, putative, expressed
LOC_Os02g40090Os.8898.1.S1_s_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40090Os.34876.1.S1_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40100Os.14160.1.S1_at11/112+24270631..24275141expressed protein
LOC_Os02g40110OsAffx.24657.1.S1_at11/112+24277094..24278935expressed protein
LOC_Os02g40120OsAffx.12423.1.S1_at11/112+24282950..24283772hypothetical protein
LOC_Os02g40130OsAffx.24658.1.S1_at11/112+24287266..24288090Leucine Rich Repeat family protein, expressed
LOC_Os02g40140NANA2+24294057..24296421transposon protein, putative, unclassified
LOC_Os02g40150NANA2+24299498..24300291hypothetical protein
LOC_Os02g40160NANA2+24301479..24302840retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24657.1.S1_at--657--4491Chr02:24277667..24277691 (25 bp)
GCCGTGAGCTGCAACGCCGACGCGT
LOC_Os02g40110
OsAffx.24657.1.S1_at--959--9691Chr02:24277588..24277612 (25 bp)
TCAACCTCGGGCAGGGCAAGTTCCG
LOC_Os02g40110
OsAffx.24657.1.S1_at--1159--5131Chr02:24277573..24277597 (25 bp)
GCAAGTTCCGGTACGCGCCGGCGAA
LOC_Os02g40110
OsAffx.24657.1.S1_at--690--1751Chr02:24277324..24277348 (25 bp)
ACCTGTTCGAGATCTCATTACGAGA
LOC_Os02g40110
OsAffx.24657.1.S1_at--938--131Chr02:24277308..24277332 (25 bp)
ATTACGAGACTGACATAAGCAATGA
LOC_Os02g40110
OsAffx.24657.1.S1_at--682--3471Chr02:24277274..24277298 (25 bp)
CAGGTGGCTCACTTGTCAAACAGGA
LOC_Os02g40110
OsAffx.24657.1.S1_at--503--5031Chr02:24277242..24277266 (25 bp)
GCAGTTAATGGCTGATTCTGACAAT
LOC_Os02g40110
OsAffx.24657.1.S1_at--777--10591Chr02:24277227..24277251 (25 bp)
TTCTGACAATATGCTTAGGAGTTAG
LOC_Os02g40110
OsAffx.24657.1.S1_at--940--951Chr02:24277204..24277228 (25 bp)
AGGACATCGCGGCTGCAGTTTTCCA
LOC_Os02g40110
OsAffx.24657.1.S1_at--1001--4691Chr02:24277196..24277220 (25 bp)
GCGGCTGCAGTTTTCCATGGATGTT
LOC_Os02g40110
OsAffx.24657.1.S1_at--123--4351Chr02:24277182..24277206 (25 bp)
CCATGGATGTTTGTATCTTCTAGAT
LOC_Os02g40110
Target Sequence 
GCCGTGAGCTGCAACGCCGACGCGTTCTCCACCCCGATGTACCCGGTCCTCGCCTCCAGCTTCGACGTGATGGCGCTGGT
CAACCTCGGGCAGGGCAAGTTCCGGTACGCGCCGGCGAACGCGCGGCGCACGGCGAACCCGTGCTTCCTCCGCGCCGCGT
CGGCGGGGGACGACGGCCGGAGCGGCGGTTCGCTGGGCCTCGACTTCGACGACAGCGGCGACCTCTTCTCCATGGGCCGC
GTCGACTCCGGCTGGCTGGAGACGGCGTCGCGGATGAGCAAGAGCAGGAAGGAGAACGGCGGCGGCGGCGGCGCGTCGGC
CGGCGACCCGGACGCCGACTCCGACCTGTTCGAGATCTCATTACGAGACTGACATAAGCAATGATGAGAGGGACAGGTGG
CTCACTTGTCAAACAGGAATTAGCAGCAGTTAATGGCTGATTCTGACAATATGCTTAGGAGTTAGGACATCGCGGCTGCA
GTTTTCCATGGATGTTTGTATCTTCTAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis