Browse Element(s) Details


OsAffx.24658.1.S1_at

Description tigr:9630.m03873
TID=OsAffx.24658.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4013011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40080Os.6402.1.S1_at11/112+24262282..24264132Tic20, putative, expressed
LOC_Os02g40090Os.8898.1.S1_s_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40090Os.34876.1.S1_at11/112+24264370..24267805transporter, putative, expressed
LOC_Os02g40100Os.14160.1.S1_at11/112+24270631..24275141expressed protein
LOC_Os02g40110OsAffx.24657.1.S1_at11/112+24277094..24278935expressed protein
LOC_Os02g40120OsAffx.12423.1.S1_at11/112+24282950..24283772hypothetical protein
LOC_Os02g40130OsAffx.24658.1.S1_at11/112+24287266..24288090Leucine Rich Repeat family protein, expressed
LOC_Os02g40140NANA2+24294057..24296421transposon protein, putative, unclassified
LOC_Os02g40150NANA2+24299498..24300291hypothetical protein
LOC_Os02g40160NANA2+24301479..24302840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40170NANA2+24305957..24306750hypothetical protein
LOC_Os02g40180OsAffx.2924.1.S1_at11/112+24309891..24312994Leucine Rich Repeat family protein, expressed
LOC_Os02g40180Os.52563.2.S1_x_at1/112+24309891..24312994Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24658.1.S1_at--106--9651Chr02:24287500..24287524 (25 bp)
TCAGGGCTTAACCTCACTGGTCTAA
LOC_Os02g40130
OsAffx.24658.1.S1_at--592--10831Chr02:24287527..24287551 (25 bp)
TTGGGTGGCCAAATTAGCTCCTCTC
LOC_Os02g40130
OsAffx.24658.1.S1_at--702--2371Chr02:24287556..24287580 (25 bp)
AAACCTGACCTTCCTTAATTATCTG
LOC_Os02g40130
OsAffx.24658.1.S1_at--1046--10491Chr02:24287570..24287594 (25 bp)
TTAATTATCTGGACCTCTCCTATAA
LOC_Os02g40130
OsAffx.24658.1.S1_at--229--10531Chr02:24287618..24287642 (25 bp)
TTCTTAACCGGCTCCAACAACTGAA
LOC_Os02g40130
OsAffx.24658.1.S1_at--1047--8291Chr02:24287676..24287700 (25 bp)
GGCTATTCCAGTCTCACTTACAAAT
LOC_Os02g40130
OsAffx.24658.1.S1_at--889--2191Chr02:24287695..24287719 (25 bp)
ACAAATTCTTCCAGCTTGTCATACC
LOC_Os02g40130
OsAffx.24658.1.S1_at--59--10051Chr02:24287741..24287765 (25 bp)
TAGTTGGTGCGATTCCTGCGAACAT
LOC_Os02g40130
OsAffx.24658.1.S1_at--452--351Chr02:24287764..24287788 (25 bp)
ATAAGCTTACTTTCGAACCTAGAGT
LOC_Os02g40130
OsAffx.24658.1.S1_at--1123--7611Chr02:24287818..24287842 (25 bp)
GGGACCGTCCTGCAAACCATAGGAG
LOC_Os02g40130
OsAffx.24658.1.S1_at--503--1811Chr02:24287977..24288001 (25 bp)
ACCCTCCATAATATATCTTCTCTAC
LOC_Os02g40130
Target Sequence 
TCAGGGCTTAACCTCACTGGTCTAAGCTTGGGTGGCCAAATTAGCTCCTCTCTCGGAAACCTGACCTTCCTTAATTATCT
GGACCTCTCCTATAATAATTTCTTTGGCCCGTTGCCTCTTCTTAACCGGCTCCAACAACTGAAAAACCTTATCCTAGGAA
GCAACAGTTTGCACGGGGCTATTCCAGTCTCACTTACAAATTCTTCCAGCTTGTCATACCTGGACCTCTCCACAAACCTT
CTAGTTGGTGCGATTCCTGCGAACATAAGCTTACTTTCGAACCTAGAGTATTTGGATCTTGATCAGAACAATCTCACCGG
GACCGTCCTGCAAACCATAGGAGACATTACGTCATTAGAAATACTTTATCTTTTTCAAAATCAACTAAGTGGAAGCATTC
CCGATAAGATTTGGCAATTGCCGAATCTTATGCAATTGGTGCTCGGTGAAAATAATTTGTCAGGTGGAATACCACAAACC
CTCCATAATATATCTTCTCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24658.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis