Browse Element(s) Details


OsAffx.2924.1.S1_at

Description tigr:9630.m03878
TID=OsAffx.2924.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4018011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40130OsAffx.24658.1.S1_at11/112+24287266..24288090Leucine Rich Repeat family protein, expressed
LOC_Os02g40140NANA2+24294057..24296421transposon protein, putative, unclassified
LOC_Os02g40150NANA2+24299498..24300291hypothetical protein
LOC_Os02g40160NANA2+24301479..24302840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40170NANA2+24305957..24306750hypothetical protein
LOC_Os02g40180OsAffx.2924.1.S1_at11/112+24309891..24312994Leucine Rich Repeat family protein, expressed
LOC_Os02g40180Os.52563.2.S1_x_at1/112+24309891..24312994Leucine Rich Repeat family protein, expressed
LOC_Os02g40190OsAffx.12425.1.S1_at11/112+24317563..24318624Leucine Rich Repeat family protein
LOC_Os02g40200Os.52563.1.S1_at11/112+24321245..24325422Leucine Rich Repeat family protein, expressed
LOC_Os02g40200Os.52563.2.S1_x_at11/112+24321245..24325422Leucine Rich Repeat family protein, expressed
LOC_Os02g40210OsAffx.24659.1.S1_at11/112+24326540..24327160hypothetical protein
LOC_Os02g40220NANA2+24327763..24328803retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g40230OsAffx.19542.3.S1_x_at5/112+24329174..24333114retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0010234biological_processtapetal cell fate specification
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2924.1.S1_at--198--5691Chr02:24312354..24312378 (25 bp)
GACTTCGGAATTTCAAGCCTCGTTC
LOC_Os02g40180
OsAffx.2924.1.S1_at--454--2651Chr02:24312368..24312392 (25 bp)
AAGCCTCGTTCTTGAGTCTAAATTT
LOC_Os02g40180
OsAffx.2924.1.S1_at--567--9511Chr02:24312384..24312408 (25 bp)
TCTAAATTTGCCTCACTTGGACATT
LOC_Os02g40180
OsAffx.2924.1.S1_at--1018--5671Chr02:24312403..24312427 (25 bp)
GACATTCCTGTCCAAATAGCTTAAT
LOC_Os02g40180
OsAffx.2924.1.S1_at--709--7471Chr02:24312583..24312607 (25 bp)
GTGTGGCAATGCATCGACCTATGGG
LOC_Os02g40180
OsAffx.2924.1.S1_at--644--1011Chr02:24312803..24312827 (25 bp)
AGGTTCTATAAATGCTTGTTGTCTG
LOC_Os02g40180
OsAffx.2924.1.S1_at--860--6631Chr02:24312820..24312844 (25 bp)
GTTGTCTGTAGTGCAGGTTGCTCTT
LOC_Os02g40180
OsAffx.2924.1.S1_at--468--5011Chr02:24312832..24312856 (25 bp)
GCAGGTTGCTCTTTCGTGCACTCAT
LOC_Os02g40180
OsAffx.2924.1.S1_at--143--7351Chr02:24312847..24312871 (25 bp)
GTGCACTCATCCGATCCCAAGAGAA
LOC_Os02g40180
OsAffx.2924.1.S1_at--456--5191Chr02:24312908..24312932 (25 bp)
GCAATCAGAACATCCTATGCTGAAG
LOC_Os02g40180
OsAffx.2924.1.S1_at--973--5851Chr02:24312934..24312958 (25 bp)
GACCAAGCGAGACGATATGCTTCGA
LOC_Os02g40180
Target Sequence 
GACTTCGGAATTTCAAGCCTCGTTCTTGAGTCTAAATTTGCCTCACTTGGACATTCCTGTCCAAATAGCTTAATCGGATT
GAAGGGAACCATAGGGTATATAGCTCCAGAGTATGCAGAGTGTGGCAATGCATCGACCTATGGGGATGTTTACGGTTTTG
GAATAGTACTTCTAGAGATGCTGACAGGTAAAAGACCAACAGATCCTATGTTTGAGAATGAGCTCAACATTGTCAACTTT
ATGGAGAAGAACTTCCCAGAGCAGATACCACATATAATTGATGCTCAACTCCAAGAAGAATGCAAAGGCTTCAATCAAGA
AAGGATCGGGCAAGAAAATAGGTTCTATAAATGCTTGTTGTCTGTAGTGCAGGTTGCTCTTTCGTGCACTCATCCGATCC
CAAGAGAACGAATGGACATTAGAGAAATAGCTATTAAGCTGCAAGCAATCAGAACATCCTATGCTGAAGCGACCAAGCGA
GACGATATGCTTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis