Browse Element(s) Details


OsAffx.24659.1.S1_at

Description tigr:9630.m03881
TID=OsAffx.24659.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4021011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40160NANA2+24301479..24302840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40170NANA2+24305957..24306750hypothetical protein
LOC_Os02g40180OsAffx.2924.1.S1_at11/112+24309891..24312994Leucine Rich Repeat family protein, expressed
LOC_Os02g40180Os.52563.2.S1_x_at1/112+24309891..24312994Leucine Rich Repeat family protein, expressed
LOC_Os02g40190OsAffx.12425.1.S1_at11/112+24317563..24318624Leucine Rich Repeat family protein
LOC_Os02g40200Os.52563.1.S1_at11/112+24321245..24325422Leucine Rich Repeat family protein, expressed
LOC_Os02g40200Os.52563.2.S1_x_at11/112+24321245..24325422Leucine Rich Repeat family protein, expressed
LOC_Os02g40210OsAffx.24659.1.S1_at11/112+24326540..24327160hypothetical protein
LOC_Os02g40220NANA2+24327763..24328803retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g40230OsAffx.19542.3.S1_x_at5/112+24329174..24333114retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g40240Os.11890.1.S1_at11/112+24344861..24348617Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24659.1.S1_at--328--4871Chr02:24326575..24326599 (25 bp)
GCTATGGCCTTCCTTGTATCCTCTC
LOC_Os02g40210
OsAffx.24659.1.S1_at--1054--6671Chr02:24326590..24326614 (25 bp)
GTATCCTCTCCCCAAGGGTCGGCGG
LOC_Os02g40210
OsAffx.24659.1.S1_at--529--4211Chr02:24326631..24326655 (25 bp)
CCGCGACGTGGTGTGCCCTGTTGAA
LOC_Os02g40210
OsAffx.24659.1.S1_at--18--2791Chr02:24326769..24326793 (25 bp)
AAGAGGGCGCCGCTTCGACGAAACT
LOC_Os02g40210
OsAffx.24659.1.S1_at--72--1631Chr02:24326814..24326838 (25 bp)
AGCGGAAGACAGAGACCGCGGCAAC
LOC_Os02g40210
OsAffx.24659.1.S1_at--527--1331Chr02:24326871..24326895 (25 bp)
AGAGTTTGCCGGTTGACGCGCTGTC
LOC_Os02g40210
OsAffx.24659.1.S1_at--28--6111Chr02:24326948..24326972 (25 bp)
GAGTCGCCGCCTAAAAGTGCTTTGT
LOC_Os02g40210
OsAffx.24659.1.S1_at--443--2851Chr02:24326962..24326986 (25 bp)
AAGTGCTTTGTTCATAGTTTCTAGA
LOC_Os02g40210
OsAffx.24659.1.S1_at--875--6031Chr02:24326995..24327019 (25 bp)
GAGATCTATGAGTCCAGGCATACCA
LOC_Os02g40210
OsAffx.24659.1.S1_at--45--931Chr02:24327010..24327034 (25 bp)
AGGCATACCAAAGGCGTGGCCGCCG
LOC_Os02g40210
OsAffx.24659.1.S1_at--455--411Chr02:24327051..24327075 (25 bp)
ATCAGTCGCTCATCACGCGTTCACG
LOC_Os02g40210
Target Sequence 
GCTATGGCCTTCCTTGTATCCTCTCCCCAAGGGTCGGCGGCGGCGAGCACGGCACGCCGCGACGTGGTGTGCCCTGTTGA
AGTCACCCCGGTCGACGAGGTCGGCACACGCGAGCGGGGAGGGGCGTCGGTGGCAGGACCATAGGGGCAGAGCGAAGGGG
GAGCTGGAGGGGAACGGTGGTGGCGAGGTGGAGGAAGAGGGCGCCGCTTCGACGAAACTCCCATCCAGGGCGAGGGAGGA
GCGGAAGACAGAGACCGCGGCAACGGGAGGGAGGTGGGGATGGAGGCGGCGAGGAGAGAGTTTGCCGGTTGACGCGCTGT
CGTCGCCGCCGTTGTCCATCCTGCCCTTGCTCATCCGCGAGGCTGTCCTCAACGAGTCGCCGCCTAAAAGTGCTTTGTTC
ATAGTTTCTAGATCAAAAAAGAGATCTATGAGTCCAGGCATACCAAAGGCGTGGCCGCCGCTCATCCACATACGCCATCA
GTCGCTCATCACGCGTTCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis