Browse Element(s) Details


Os.11890.1.S1_at

Description gb:AK065018.1
DB_XREF= gi:32975036
TID=Os.11890.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.11890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001F17, full insert sequence.
FL= gb:AK111664.1 gb:AK065018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4024011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40200Os.52563.1.S1_at11/112+24321245..24325422Leucine Rich Repeat family protein, expressed
LOC_Os02g40200Os.52563.2.S1_x_at11/112+24321245..24325422Leucine Rich Repeat family protein, expressed
LOC_Os02g40210OsAffx.24659.1.S1_at11/112+24326540..24327160hypothetical protein
LOC_Os02g40220NANA2+24327763..24328803retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g40230OsAffx.19542.3.S1_x_at5/112+24329174..24333114retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g40240Os.11890.1.S1_at11/112+24344861..24348617Leucine Rich Repeat family protein, expressed
LOC_Os02g40250Os.10263.1.S1_at2/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250OsAffx.10222.1.S1_x_at2/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250OsAffx.22442.1.S1_x_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250OsAffx.6693.1.S1_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250Os.45902.1.A1_x_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250Os.51841.1.S1_x_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40250Os.11828.1.S1_at1/112+24355225..24363775retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g40260Os.4614.1.S1_a_at11/112+24366937..24368621Leucine Rich Repeat family protein, expressed
LOC_Os02g40260Os.4614.2.S1_x_at11/112+24366937..24368621Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009556biological_processmicrosporogenesis
GO:0010234biological_processtapetal cell fate specification
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11890.1.S1_at--275--5631Chr02:24348090..24348114 (25 bp)
GACACTGGAAAATGCTGTCCACCAG
LOC_Os02g40240
Os.11890.1.S1_at--233--2291Chr02:24348099..24348123 (25 bp)
AAATGCTGTCCACCAGTGCTTGATA
LOC_Os02g40240
Os.11890.1.S1_at--177--8711Chr02:24348105..24348129 (25 bp)
TGTCCACCAGTGCTTGATATCTCTG
LOC_Os02g40240
Os.11890.1.S1_at--574--5131Chr02:24348155..24348179 (25 bp)
GCAAATTACCAAGTGATCGCATGAA
LOC_Os02g40240
Os.11890.1.S1_at--1075--2791Chr02:24348269..24348293 (25 bp)
AAGATGCATGAAACCCCACGCGTTA
LOC_Os02g40240
Os.11890.1.S1_at--458--5551Chr02:24348278..24348302 (25 bp)
GAAACCCCACGCGTTATTACAGGCG
LOC_Os02g40240
Os.11890.1.S1_at--504--4151Chr02:24348287..24348311 (25 bp)
CGCGTTATTACAGGCGACCCTGAGT
LOC_Os02g40240
Os.11890.1.S1_at--74--6471Chr02:24348336..24348360 (25 bp)
GATAAGTGTATAGTCCAACAAGAAG
LOC_Os02g40240
Os.11890.1.S1_at--110--3051Chr02:24348404..24348428 (25 bp)
AATATGAAGCACCAAAGCGTACCTT
LOC_Os02g40240
Os.11890.1.S1_at--16--2671Chr02:24348418..24348442 (25 bp)
AAGCGTACCTTCTAACGGTGATAAT
LOC_Os02g40240
Os.11890.1.S1_at--237--6291Chr02:24348534..24348558 (25 bp)
GATGTTGTACCTAGCATGATCTTGT
LOC_Os02g40240
Target Sequence 
GACACTGGAAAATGCTGTCCACCAGTGCTTGATATCTCTGCTACAACTTGCGCTTTCTTGTACGCGCAAATTACCAAGTG
ATCGCATGAACATGAAACAAATAGCCAACAAGATGCATTCAATCAAGACGACATATGTTGGATTGGAAGCTAAGAAATAT
GGTCCGGCATGTAATGAACAAGATGCATGAAACCCCACGCGTTATTACAGGCGACCCTGAGTCGCGCACAACAATTGCAA
CATATTGATAAGTGTATAGTCCAACAAGAAGAAAATGGTTCTTGTGTGTTAGAAGTTAAGATAATTAAGGTGATAATATG
AAGCACCAAAGCGTACCTTCTAACGGTGATAATATGAAGATTGGTGATTGTGACTTTATGTCATGGTTTATTTATAACAA
TATATTACTTCAATAATGTAATAGTATATGTATACGTAGATAATGATGTTGTACCTAGCATGATCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis