Browse Element(s) Details


Os.52563.1.S1_at

Description gb:AK100073.1
DB_XREF= gi:32985282
TID=Os.52563.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013170D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013170D14, full insert sequence.
FL= gb:AK100073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4020011/11Leucine Rich Repeat family protein, expressed
LOC_Os01g565801/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40140NANA2+24294057..24296421transposon protein, putative, unclassified
LOC_Os02g40150NANA2+24299498..24300291hypothetical protein
LOC_Os02g40160NANA2+24301479..24302840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40170NANA2+24305957..24306750hypothetical protein
LOC_Os02g40180OsAffx.2924.1.S1_at11/112+24309891..24312994Leucine Rich Repeat family protein, expressed
LOC_Os02g40180Os.52563.2.S1_x_at1/112+24309891..24312994Leucine Rich Repeat family protein, expressed
LOC_Os02g40190OsAffx.12425.1.S1_at11/112+24317563..24318624Leucine Rich Repeat family protein
LOC_Os02g40200Os.52563.1.S1_at11/112+24321245..24325422Leucine Rich Repeat family protein, expressed
LOC_Os02g40200Os.52563.2.S1_x_at11/112+24321245..24325422Leucine Rich Repeat family protein, expressed
LOC_Os02g40210OsAffx.24659.1.S1_at11/112+24326540..24327160hypothetical protein
LOC_Os02g40220NANA2+24327763..24328803retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g40230OsAffx.19542.3.S1_x_at5/112+24329174..24333114retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g40240Os.11890.1.S1_at11/112+24344861..24348617Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52563.1.S1_at--195--3431Chr02:24324862..24324885 (24 bp)
CAGAGTATGCTCAGTGTGGCCATGC
LOC_Os02g40200
Os.52563.1.S1_at--547--6051Chr02:24325060..24325084 (25 bp)
GAGATTTCAAGCAACAGCCAAGCAA
LOC_Os02g40200
Os.52563.1.S1_at--776--2972Chr02:24325088..24325112 (25 bp)
AATGGTTTCTATATATGCTTGTTGT
LOC_Os02g40200
Os.52563.1.S1_at--861--6631Chr02:24325108..24325132 (25 bp)
GTTGTCTGTATTGCAAGTGGCTCTT
LOC_Os02g40200
Os.52563.1.S1_at--754--1091Chr02:24325123..24325147 (25 bp)
AGTGGCTCTTTCTTGCACTCGTCTG
LOC_Os02g40200
Os.52563.1.S1_at--1012--10731Chr02:24325135..24325159 (25 bp)
TTGCACTCGTCTGATCCCAAGAGAA
LOC_Os02g40200
Os.52563.1.S1_at--225--6671Chr02:24325189..24325213 (25 bp)
GTTGCATGCAATTAAAACTTCCTAT
LOC_Os02g40200
Os.52563.1.S1_at--635--2391Chr02:24325203..24325227 (25 bp)
AAACTTCCTATGCAGAAGCGACCAA
LOC_Os02g40200
Os.52563.1.S1_at--773--8651Chr02:24325318..24325342 (25 bp)
TGTGGATGAACTGCCAAACAGGCCA
LOC_Os02g40200
Os.52563.1.S1_at--909--2391Chr02:24325333..24325357 (25 bp)
AAACAGGCCATCAGCATACACAGAT
LOC_Os02g40200
Os.52563.1.S1_at--843--5971Chr02:24325369..24325393 (25 bp)
GAGAAACTACTCTTCTGTACAGCAA
LOC_Os02g40200
Target Sequence 
CAGAGTATGCTCAGTGTGGCCATGCATCAACATATGGGGATGTTTATAGTTTTGGAATAGTACTTCTAGAGATGCTGACA
GGTAAAAGACCAACAGACCCTATGTTTGAGAATGAGCTCAACATTGTCAACTTTGTGGAGAAGAACTTCCCAGAGCAGAT
ACCACAGATAATTGATGCTCAACTCCAAGAAGAACGCAAGAGATTTCAAGCAACAGCCAAGCAAGAAAATGGTTTCTATA
TATGCTTGTTGTCTGTATTGCAAGTGGCTCTTTCTTGCACTCGTCTGATCCCAAGAGAACGAATGAACACTAGAGAAATA
GCTATTAAGTTGCATGCAATTAAAACTTCCTATGCAGAAGCGACCAAGCGAGAAAGTACGCTTTGCAGGAGAGAGTTAGA
GTGTGTCATGGAACTAGTGTAATTGTGATGTTTTGTAGTTGTAGGCTTTGAATGCGATGTGGATGAACTGCCAAACAGGC
CATCAGCATACACAGATACACTGGATGTGAGAAACTACTCTTCTGTACAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis