Browse Element(s) Details


OsAffx.12425.1.S1_at

Description tigr:9630.m03879
TID=OsAffx.12425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4019011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40140NANA2+24294057..24296421transposon protein, putative, unclassified
LOC_Os02g40150NANA2+24299498..24300291hypothetical protein
LOC_Os02g40160NANA2+24301479..24302840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g40170NANA2+24305957..24306750hypothetical protein
LOC_Os02g40180OsAffx.2924.1.S1_at11/112+24309891..24312994Leucine Rich Repeat family protein, expressed
LOC_Os02g40180Os.52563.2.S1_x_at1/112+24309891..24312994Leucine Rich Repeat family protein, expressed
LOC_Os02g40190OsAffx.12425.1.S1_at11/112+24317563..24318624Leucine Rich Repeat family protein
LOC_Os02g40200Os.52563.1.S1_at11/112+24321245..24325422Leucine Rich Repeat family protein, expressed
LOC_Os02g40200Os.52563.2.S1_x_at11/112+24321245..24325422Leucine Rich Repeat family protein, expressed
LOC_Os02g40210OsAffx.24659.1.S1_at11/112+24326540..24327160hypothetical protein
LOC_Os02g40220NANA2+24327763..24328803retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g40230OsAffx.19542.3.S1_x_at5/112+24329174..24333114retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12425.1.S1_at--1000--2311Chr02:24318040..24318064 (25 bp)
AAAGGTGTCATGTGCACCACTGCAC
LOC_Os02g40190
OsAffx.12425.1.S1_at--954--10611Chr02:24318149..24318173 (25 bp)
TTCGTGCACTTGACTTGTCCTCAAA
LOC_Os02g40190
OsAffx.12425.1.S1_at--484--9691Chr02:24318169..24318193 (25 bp)
TCAAATCGCTTCTTTGGTCGGTTCC
LOC_Os02g40190
OsAffx.12425.1.S1_at--827--671Chr02:24318236..24318260 (25 bp)
ATGACAACTCACTCGATGGGATTAT
LOC_Os02g40190
OsAffx.12425.1.S1_at--1146--7651Chr02:24318253..24318277 (25 bp)
GGGATTATTTCGGACACACTTACAA
LOC_Os02g40190
OsAffx.12425.1.S1_at--1095--5011Chr02:24318321..24318345 (25 bp)
GCAGGGTGCAATTCCTCCTAGAATA
LOC_Os02g40190
OsAffx.12425.1.S1_at--546--7971Chr02:24318346..24318370 (25 bp)
GGATCCCTAGAGTATCTGAACCTTG
LOC_Os02g40190
OsAffx.12425.1.S1_at--308--291Chr02:24318377..24318401 (25 bp)
ATAGTCTCACTGGAATCATCCCTGC
LOC_Os02g40190
OsAffx.12425.1.S1_at--38--9771Chr02:24318450..24318474 (25 bp)
TAATCTCACTGGAATCATCCCTGCA
LOC_Os02g40190
OsAffx.12425.1.S1_at--255--9011Chr02:24318471..24318495 (25 bp)
TGCAACCGTTGAAAATCTCACCCTG
LOC_Os02g40190
OsAffx.12425.1.S1_at--584--5671Chr02:24318570..24318594 (25 bp)
GACATATCTTCTCCTAGGTCAGAAT
LOC_Os02g40190
Target Sequence 
AAAGGTGTCATGTGCACCACTGCACGGCCGTTTCGCGTCTCAACGCTGAATCTCTCCGCCCAAAGCTTGGCAGGGGAAAT
CACCTCCTCCCTTGCAAACCTCACGTTTCTTCGTGCACTTGACTTGTCCTCAAATCGCTTCTTTGGTCGGTTCCCTCTCC
TTAACCACCTACAGCATCTGGGTTTTCTTTACATGAATGACAACTCACTCGATGGGATTATTTCGGACACACTTACAAAT
TGTTCCAAATTGACACAAATAGACCTCTCTAATAACCAGCTGCAGGGTGCAATTCCTCCTAGAATAGGATCCCTAGAGTA
TCTGAACCTTGGCAATAATAGTCTCACTGGAATCATCCCTGCAACCATTGGAAACCTTGTCAAATTTGGATATTTGAACC
TTGGTATGAATAATCTCACTGGAATCATCCCTGCAACCGTTGAAAATCTCACCCTGTTAACAGTTCTCAGGCTTGAATAC
AATCAGTTTGAAGGAAAAATCCCAGATGGGGTCTGGCAATTGGCAAATCTGACATATCTTCTCCTAGGTCAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis