Browse Element(s) Details


Os.11828.1.S1_at

Description gb:AK119953.1
DB_XREF= gi:37989576
TID=Os.11828.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11828 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-C07, full insert sequence.
FL= gb:AK120805.1 gb:AK105702.1 gb:AK119953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2683010/11Lung seven transmembrane receptor family protein, expressed
LOC_Os02g402501/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26790OsAffx.8028.1.S1_x_at1/119+16279241..16279480hypothetical protein
LOC_Os09g26800Os.27736.1.S1_at11/119+16281842..16286188glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g26810Os.52535.1.S1_at11/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26810Os.52535.1.S1_x_at10/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26820Os.53879.1.S1_at11/119+16293641..16296109Exo70 exocyst complex subunit family protein, expressed
LOC_Os09g26830Os.11828.1.S1_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26830Os.11828.1.S2_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26840Os.52712.1.S1_at11/119+16306793..16309836expressed protein
LOC_Os09g26850NANA9+16318841..16319799hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_s_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26870Os.8205.1.S1_at11/119+16324943..16328921BRCA1 C Terminus domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11828.1.S1_at--996--2871Chr09:16303613..16303637 (25 bp)
AAGGGCAATGCGTTCATCCTCCACG
LOC_Os09g26830
Os.11828.1.S1_at--916--1811NONE
ACGCCTTCATCCGATTTGACAAGAT
NONE
Os.11828.1.S1_at--814--6631Chr09:16302068..16302092 (25 bp)
GTTGTACCTCAGATCTTGCGAAGTT
LOC_Os09g26830
Os.11828.1.S1_at--774--5911Chr09:16302041..16302065 (25 bp)
GAGCTTGCACGGAAGGTTCTGTCAT
LOC_Os09g26830
Os.11828.1.S1_at--478--9611Chr09:16302020..16302044 (25 bp)
TCATCTATCGGCCATCACAGGTGAA
LOC_Os09g26830
Os.11828.1.S1_at--287--2132Chr02:24355449..24355468 (20 bp)
ACAGGTGAATCCTGGCTGGCCACAG
LOC_Os02g40250
Os.11828.1.S1_at--722--8451Chr09:16301988..16302012 (25 bp)
TGGCCACAGTTGCTTTTTTCATCTT
LOC_Os09g26830
Os.11828.1.S1_at--1157--7351Chr09:16301954..16301978 (25 bp)
GTGACACGATTGCAACACTACCTTC
LOC_Os09g26830
Os.11828.1.S1_at--508--4331Chr09:16301871..16301895 (25 bp)
CCATCACTTGCTGGTCTGGAGATAG
LOC_Os09g26830
Os.11828.1.S1_at--309--2271Chr09:16301827..16301851 (25 bp)
AAATCCTACTGGGTATCTTCCTGGT
LOC_Os09g26830
Os.11828.1.S1_at--1030--7171Chr09:16301804..16301828 (25 bp)
GTCGGATGGCACCTCTTAAGAACTT
LOC_Os09g26830
Target Sequence 
AAGGGCAATGCGTTCATCCTCCACGCCGGCAGCGAGGGCCTCTACGCGCCGTCCTCCCCCGCGAATGCGACGACCGCGGA
GGACGACGAGGATGCCGCCGCCGCCGCCGTGGCCGACGCCTTCATCCGATTTGACAAGATTACGTTTAGGAGACCAAAGG
ATGCTGCAAAGGAAACTGGTTCAGCAATGGTTCAGATACTTGTTTTTGAGATAGAAGATCGTGAGATGATTGGTGGATCA
GCATATGGAGGTCAGAAAGCTATTTGTTGTACCTCAGATCTTGCGAAGTTAGGAGCTTGCACGGAAGGTTCTGTCATCTA
TCGGCCATCACAGGTGAATCCTGGCTGGCCACAGTTGCTTTTTTCATCTTTTGATGGAAGTGACACGATTGCAACACTAC
CTTCAAGGATCATTCCTATAACAAAAACCGGGATGTACAATATGTACTTCATACACTGTGATCCATCACTTGCTGGTCTG
GAGATAGAGGGGCAAACCGTATGGAAAAATCCTACTGGGTATCTTCCTGGTCGGATGGCACCTCTTAAGAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis