Browse Element(s) Details


Os.8205.1.S1_at

Description gb:AK073097.1
DB_XREF= gi:32983120
TID=Os.8205.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.8205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23388 unknown mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033005K23, full insert sequence.
FL= gb:AK063852.1 gb:AK073097.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2687011/11BRCA1 C Terminus domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26830Os.11828.1.S1_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26830Os.11828.1.S2_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26840Os.52712.1.S1_at11/119+16306793..16309836expressed protein
LOC_Os09g26850NANA9+16318841..16319799hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_s_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26870Os.8205.1.S1_at11/119+16324943..16328921BRCA1 C Terminus domain containing protein, expressed
LOC_Os09g26880Os.7932.1.S1_at10/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.56045.1.S1_at9/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880OsAffx.23696.1.S1_x_at2/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.12365.3.S1_x_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.17915.1.S1_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26890OsAffx.17915.1.S1_x_at11/119+16342797..16343120hypothetical protein
LOC_Os09g26900Os.5955.1.S1_at11/119+16346079..16346890Ctr copper transporter family protein, expressed
LOC_Os09g26910OsAffx.17916.1.S1_at11/119+16348802..16349264hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8205.1.S1_at--19--411Chr09:16328140..16328164 (25 bp)
ATCAGTCAAGCGATAGTTTCACCCG
LOC_Os09g26870
Os.8205.1.S1_at--472--10311Chr09:16328156..16328179 (24 bp)
TTTCACCCGCCCACTAAGAGAAAGT
LOC_Os09g26870
Os.8205.1.S1_at--346--7011Chr09:16328290..16328314 (25 bp)
GTACTCTTCCCCATTGATCGTTTTG
LOC_Os09g26870
Os.8205.1.S1_at--288--411Chr09:16328306..16328330 (25 bp)
ATCGTTTTGGTGAGCTTGGACCTTC
LOC_Os09g26870
Os.8205.1.S1_at--942--8091Chr09:16328323..16328347 (25 bp)
GGACCTTCCTCAAGGACATTCTTCA
LOC_Os09g26870
Os.8205.1.S1_at--850--111Chr09:16328340..16328364 (25 bp)
ATTCTTCAGCAATGGTGGTTTCACA
LOC_Os09g26870
Os.8205.1.S1_at--834--7871Chr09:16328356..16328380 (25 bp)
GGTTTCACACGCATACAAGTGCTTG
LOC_Os09g26870
Os.8205.1.S1_at--337--2991Chr09:16328574..16328598 (25 bp)
AATGTAGCCCTGCAAACGGATTCAC
LOC_Os09g26870
Os.8205.1.S1_at--15--10651Chr09:16328614..16328638 (25 bp)
TTCGCTCGCTGTACGCAAGTACTGA
LOC_Os09g26870
Os.8205.1.S1_at--562--7591Chr09:16328761..16328785 (25 bp)
GGGCATAAACTGCACCATACTCGGT
LOC_Os09g26870
Os.8205.1.S1_at--329--8751Chr09:16328829..16328853 (25 bp)
TGTACTACCATGTATGCACGCCGAA
LOC_Os09g26870
Target Sequence 
ATCAGTCAAGCGATAGTTTCACCCGCCCACTAAGAGAAAGTGAGAAGAGTGAAGTGATCTTTAAGAACCACTTCCTTACC
GTACTCTTCCCCATTGATCGTTTTGGTGAGCTTGGACCTTCCTCAAGGACATTCTTCAGCAATGGTGGTTTCACACGCAT
ACAAGTGCTTGATCACATCTACAACTTCTACCAGGAAAATATGTCTTCCGATGAGATAAATGTAGCCCTGCAAACGGATT
CACGACATGCTGATCGACTTCGCTCGCTGTACGCAAGTACTGAATCAGCAGAAAGAGGTTTTGTAACATTCAAAAGAATT
GATTTTTTGGGAAGCCGAAGAAGTTTTGAGGGGCTAAAAACGCCTCAGCAGAGAGAACAATAGCAATGTATATGAGCTTG
TGATTAGGGCATAAACTGCACCATACTCGGTGTTATTTAGTCAAATTTGTTTGTTGTTTACAGGTTGATAGTGATGTACT
ACCATGTATGCACGCCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis