Browse Element(s) Details


Os.52712.1.S1_at

Description gb:AK068870.1
DB_XREF= gi:32978895
TID=Os.52712.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002M06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002M06, full insert sequence.
FL= gb:AK068870.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2684011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26800Os.27736.1.S1_at11/119+16281842..16286188glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g26810Os.52535.1.S1_at11/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26810Os.52535.1.S1_x_at10/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26820Os.53879.1.S1_at11/119+16293641..16296109Exo70 exocyst complex subunit family protein, expressed
LOC_Os09g26830Os.11828.1.S1_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26830Os.11828.1.S2_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26840Os.52712.1.S1_at11/119+16306793..16309836expressed protein
LOC_Os09g26850NANA9+16318841..16319799hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_s_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26860OsAffx.17941.1.A1_at11/119+16320537..16322517hypothetical protein
LOC_Os09g26870Os.8205.1.S1_at11/119+16324943..16328921BRCA1 C Terminus domain containing protein, expressed
LOC_Os09g26880Os.7932.1.S1_at10/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.56045.1.S1_at9/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880OsAffx.23696.1.S1_x_at2/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.12365.3.S1_x_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed
LOC_Os09g26880Os.17915.1.S1_at1/119+16329087..16337538Aldehyde dehydrogenase family 7 member A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52712.1.S1_at--677--9851Chr09:16307621..16307645 (25 bp)
TACACTCAAGCCGAGATCAGTCGCT
LOC_Os09g26840
Os.52712.1.S1_at--509--1151Chr09:16307603..16307627 (25 bp)
AGTCGCTTCGTTGCTCAAGTTATTC
LOC_Os09g26840
Os.52712.1.S1_at--229--731Chr09:16307578..16307602 (25 bp)
ATGTGTAAGGGTGGCTTTACCTCCG
LOC_Os09g26840
Os.52712.1.S1_at--1062--10451Chr09:16307562..16307586 (25 bp)
TTACCTCCGTAGTTCCAGAACCAAG
LOC_Os09g26840
Os.52712.1.S1_at--602--3251Chr09:16307379..16307403 (25 bp)
CAAAATTCTTCCACGCTAGTTGCTA
LOC_Os09g26840
Os.52712.1.S1_at--1037--7971Chr09:16307302..16307326 (25 bp)
GGATGCACTGCGTGATCTAGACGAT
LOC_Os09g26840
Os.52712.1.S1_at--615--10431Chr09:16307117..16307136 (20 bp)
TTAGTTCGTTCATGCCAGGTTCCAA
LOC_Os09g26840
Os.52712.1.S1_at--19--1011Chr09:16306986..16307010 (25 bp)
AGGTTCCAAAGGTCCTGGCAAGCTT
LOC_Os09g26840
Os.52712.1.S1_at--761--10111Chr09:16306901..16306925 (25 bp)
TATGATCATGTAATGCTCCTCCATT
LOC_Os09g26840
Os.52712.1.S1_at--334--7971Chr09:16306837..16306861 (25 bp)
GGAGGTTCTGGGACAAAGGCCTATT
LOC_Os09g26840
Os.52712.1.S1_at--1013--2291Chr09:16306823..16306847 (25 bp)
AAAGGCCTATTCCATGTGTCTACTC
LOC_Os09g26840
Target Sequence 
TACACTCAAGCCGAGATCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCAGAAC
CAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAGAAGAAAATACACCCGCAAAATTCT
TCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAGCCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCG
TGATCTAGACGATGATGGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAAGTTGGGTGAATA
TGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGTTTATGGTGTTACTACGTAATGATATAAATATG
GGATATAGTTAGCAATGAAGCTCTATGATCATGTAATGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATC
ATGATAAGGAGGTTCTGGGACAAAGGCCTATTCCATGTGTCTACTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis