Browse Element(s) Details


Os.27736.1.S1_at

Description gb:AK121407.1
DB_XREF= gi:37991030
TID=Os.27736.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132L13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132L13, full insert sequence.
FL= gb:AK121407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2680011/11glycoside hydrolase family 28 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g26770Os.57123.1.S1_at11/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.1.S1_at8/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_x_at4/119+16258677..16264873expressed protein
LOC_Os09g26770Os.12963.1.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26770OsAffx.12764.2.S1_at3/119+16258677..16264873expressed protein
LOC_Os09g26780Os.48064.1.S1_at10/119+16272521..16274267ZIM motif family protein, expressed
LOC_Os09g26790OsAffx.8028.1.S1_x_at1/119+16279241..16279480hypothetical protein
LOC_Os09g26800Os.27736.1.S1_at11/119+16281842..16286188glycoside hydrolase family 28 protein, putative, expressed
LOC_Os09g26810Os.52535.1.S1_at11/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26810Os.52535.1.S1_x_at10/119+16286915..16289735Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
LOC_Os09g26820Os.53879.1.S1_at11/119+16293641..16296109Exo70 exocyst complex subunit family protein, expressed
LOC_Os09g26830Os.11828.1.S1_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26830Os.11828.1.S2_at10/119+16299796..16303846Lung seven transmembrane receptor family protein, expressed
LOC_Os09g26840Os.52712.1.S1_at11/119+16306793..16309836expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27736.1.S1_at--808--5871Chr09:16285675..16285699 (25 bp)
GAGCGCAGAGATCCCCGTGAAGAAT
LOC_Os09g26800
Os.27736.1.S1_at--268--8131Chr09:16285737..16285761 (25 bp)
GGAAGAACCACGTTTTCCAGTGCTC
LOC_Os09g26800
Os.27736.1.S1_at--431--7131Chr09:16285778..16285802 (25 bp)
GTCATTGGCTATGTTTTCCCTGTAC
LOC_Os09g26800
Os.27736.1.S1_at--1152--6971Chr09:16285799..16285823 (25 bp)
GTACCGTGCAAGAACCTGGATCTGT
LOC_Os09g26800
Os.27736.1.S1_at--245--4271Chr09:16285813..16285837 (25 bp)
CCTGGATCTGTACAACGAGCGGCGT
LOC_Os09g26800
Os.27736.1.S1_at--1031--1191Chr09:16285886..16285910 (25 bp)
AGTTTTTGACAAGGCGGCACCCTCT
LOC_Os09g26800
Os.27736.1.S1_at--996--10611Chr09:16285915..16285939 (25 bp)
TTCGGTTCACTGTACCATTGCTGTA
LOC_Os09g26800
Os.27736.1.S1_at--947--10371Chr09:16285989..16286013 (25 bp)
TTTTACAGCTTTCACTCTCAGAGTC
LOC_Os09g26800
Os.27736.1.S1_at--445--1771Chr09:16286039..16286063 (25 bp)
ACCTGTCTATACTGCCTCACAAAAG
LOC_Os09g26800
Os.27736.1.S1_at--223--2311Chr09:16286060..16286084 (25 bp)
AAAGGACACTGATGTTTCCACTTCA
LOC_Os09g26800
Os.27736.1.S1_at--912--3071Chr09:16286106..16286130 (25 bp)
AATCAGGCCCATAGCTCAATTGTAC
LOC_Os09g26800
Target Sequence 
GAGCGCAGAGATCCCCGTGAAGAATGTTACTTTCCATGATATGTCAGTCGGTTTGGTGGACAGGAAGAACCACGTTTTCC
AGTGCTCCTTCGTCCAGGGGCAGGTCATTGGCTATGTTTTCCCTGTACCGTGCAAGAACCTGGATCTGTACAACGAGCGG
CGTGAGCTGGTTAAACAATCAGCACTGCAGAATATCTCTGATATCGACTACAGTTTTTGACAAGGCGGCACCCTCTTTTT
TTCGGTTCACTGTACCATTGCTGTAGGAGTATTCACTGCTCAGTTAACAGTTACAGAGAATTTTTTGGGTAGCTTTTTAC
AGCTTTCACTCTCAGAGTCTCAGGAATGTATTTAAGGATGTTCCACCTGTCTATACTGCCTCACAAAAGGACACTGATGT
TTCCACTTCAGTCATGTATTTGTACACACTAAATCAGGCCCATAGCTCAATTGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis