Browse Element(s) Details


OsAffx.8028.1.S1_x_at

Description gb:NM_196973.1
DB_XREF= gi:37535305
TID=OsAffx.8028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0001K12.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3340011/11hypothetical protein
LOC_Os09g267901/11hypothetical protein
LOC_Os06g240201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33370Os.10251.1.S1_at11/1110+17234777..17242065beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os10g33390OsAffx.30651.1.S1_at11/1110+17242773..17244371hypothetical protein
LOC_Os10g33380NANA10+17245001..17246559transposon protein, putative, unclassified
LOC_Os10g33400OsAffx.8028.1.S1_x_at11/1110+17248667..17249263hypothetical protein
LOC_Os10g33410OsAffx.30652.1.S1_x_at11/1110+17251633..17252798hypothetical protein
LOC_Os10g33410Os.54461.1.S1_at11/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.1.S1_at9/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.2.S1_x_at9/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.2.S1_at6/1110+17251633..17252798hypothetical protein
LOC_Os10g33420Os.22652.2.S1_x_at11/1110+17255157..17263307expressed protein
LOC_Os10g33420Os.22652.1.S1_at11/1110+17255157..17263307expressed protein
LOC_Os10g33430NANA10+17271928..17272161hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8028.1.S1_x_at--98--8711Chr10:17248697..17249156 (25 bp)
TGTCCGTCACTTCATCGATTCGAGG
LOC_Os10g33400
OsAffx.8028.1.S1_x_at--260--7251Chr10:17248698..17249157 (25 bp)
GTCCGTCACTTCATCGATTCGAGGA
LOC_Os10g33400
OsAffx.8028.1.S1_x_at--246--4251Chr10:17248700..17249159 (25 bp)
CCGTCACTTCATCGATTCGAGGAGA
LOC_Os10g33400
OsAffx.8028.1.S1_x_at--886--4011Chr10:17248701..17249160 (25 bp)
CGTCACTTCATCGATTCGAGGAGAA
LOC_Os10g33400
OsAffx.8028.1.S1_x_at--1038--7091Chr10:17248702..17249161 (25 bp)
GTCACTTCATCGATTCGAGGAGAAA
LOC_Os10g33400
OsAffx.8028.1.S1_x_at--820--9691Chr10:17248703..17249162 (25 bp)
TCACTTCATCGATTCGAGGAGAAAG
LOC_Os10g33400
OsAffx.8028.1.S1_x_at--14--9617Chr10:17248708..17249167 (25 bp)
TCATCGATTCGAGGAGAAAGACTAC
LOC_Os10g33400
OsAffx.8028.1.S1_x_at--224--9395Chr10:17249148..17249170 (23 bp)
TCGATTCGAGGAGAAAGACTACCTT
LOC_Os10g33400
OsAffx.8028.1.S1_x_at--291--99540Chr10:17249180..17249204 (25 bp)
TACGAGTCACACTTCAGACCGCCAA
LOC_Os10g33400
OsAffx.8028.1.S1_x_at--780--6095Chr10:17249183..17249207 (25 bp)
GAGTCACACTTCAGACCGCCAAATC
LOC_Os10g33400
OsAffx.8028.1.S1_x_at--612--7091Chr10:17249185..17249209 (25 bp)
GTCACACTTCAGACCGCCAAATCAA
LOC_Os10g33400
Target Sequence 
TGTCCGTCACTTCATCGATTCGAGGAGAAAGACTACCTTGTTGTCGACTACGAGTCACACTTCAGACCGCCAAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8028.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis