Browse Element(s) Details


Os.22652.1.S1_at

Description gb:AK067795.1
DB_XREF= gi:32977813
TID=Os.22652.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0001K12.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013118D11, full insert sequence.
FL= gb:AK067795.1 gb:AK073558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3342011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33370Os.10251.1.S1_at11/1110+17234777..17242065beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os10g33390OsAffx.30651.1.S1_at11/1110+17242773..17244371hypothetical protein
LOC_Os10g33380NANA10+17245001..17246559transposon protein, putative, unclassified
LOC_Os10g33400OsAffx.8028.1.S1_x_at11/1110+17248667..17249263hypothetical protein
LOC_Os10g33410OsAffx.30652.1.S1_x_at11/1110+17251633..17252798hypothetical protein
LOC_Os10g33410Os.54461.1.S1_at11/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.1.S1_at9/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.2.S1_x_at9/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.2.S1_at6/1110+17251633..17252798hypothetical protein
LOC_Os10g33420Os.22652.2.S1_x_at11/1110+17255157..17263307expressed protein
LOC_Os10g33420Os.22652.1.S1_at11/1110+17255157..17263307expressed protein
LOC_Os10g33430NANA10+17271928..17272161hypothetical protein
LOC_Os10g33440OsAffx.18502.1.S1_at11/1110+17277212..17283556NB-ARC domain containing protein, expressed
LOC_Os10g33450OsAffx.18503.1.S1_at11/1110+17286836..17287819hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22652.1.S1_at--622--6231Chr10:17255642..17255666 (25 bp)
GATGGACAGGATACACCTATCCCCA
LOC_Os10g33420
Os.22652.1.S1_at--4--10151Chr10:17255625..17255649 (25 bp)
TATCCCCACAAATGATCCGGGCAAT
LOC_Os10g33420
Os.22652.1.S1_at--212--6771Chr10:17255587..17255611 (25 bp)
GTTAGAAAGATAGCACCCGACAATA
LOC_Os10g33420
Os.22652.1.S1_at--935--2231Chr10:17255568..17255592 (25 bp)
ACAATAGATGTTTCCCTAGCTCTGC
LOC_Os10g33420
Os.22652.1.S1_at--87--4311Chr10:17255554..17255578 (25 bp)
CCTAGCTCTGCATTTCGTTGTGAAT
LOC_Os10g33420
Os.22652.1.S1_at--829--7871Chr10:17255413..17255437 (25 bp)
GGTTTTCCTTGAAATCAGAGGGCAT
LOC_Os10g33420
Os.22652.1.S1_at--548--1571Chr10:17255368..17255392 (25 bp)
AGCTCAGTAGCTCACACTCTCACAG
LOC_Os10g33420
Os.22652.1.S1_at--103--3671Chr10:17255245..17255269 (25 bp)
CTTTAACTGATGTCTGAGCTTCCCT
LOC_Os10g33420
Os.22652.1.S1_at--865--5891Chr10:17255230..17255254 (25 bp)
GAGCTTCCCTTTGCGGGTATCAATT
LOC_Os10g33420
Os.22652.1.S1_at--1144--6871Chr10:17255214..17255238 (25 bp)
GTATCAATTCCGAGAAACACAGTGT
LOC_Os10g33420
Os.22652.1.S1_at--80--8131Chr10:17255173..17255197 (25 bp)
GGACATTCCGTAATATAATCGTTAA
LOC_Os10g33420
Target Sequence 
GATGGACAGGATACACCTATCCCCACAAATGATCCGGGCAATGAACGAGATTAATGTTAGAAAGATAGCACCCGACAATA
GATGTTTCCCTAGCTCTGCATTTCGTTGTGAATGCTGACCACAAAAAAAAAAGAGAAGCAAAATGCAACAACTGAGTAGT
AACATACATATATATACTTTCCTTTTCGGCTTTTCCTTGGCCCCTTACAAGTTTCAGTGGGGTTCATGGGGTTTTCCTTG
AAATCAGAGGGCATATAAATCTANGGAACCACTAAGCTCAGTAGCTCACACTCTCACAGCTCGAAAAGAGCTCNTGTTGT
ATAATTGTACAGTAAACTACAAAATCATATCGTCAGCATCATCNNNTTTGCTNTGCGTCAAAAANNTTTGTTTACAGACT
CTTTAACTGATGTCTGAGCTTCCCTTTGCGGGTATCAATTCCGAGAAACACAGTGTATATAGATTTTACAATGGACATTC
CGTAATATAATCGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis