Browse Element(s) Details


Os.10251.1.S1_at

Description gb:AK120294.1
DB_XREF= gi:37989917
TID=Os.10251.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10251 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative fatty acid elongase 3-ketoacyl-CoA synthase (OSJNBa0001K12.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013051A05, full insert sequence.
FL= gb:AK120294.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3337011/11beta-ketoacyl-CoA synthase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33350Os.2580.1.S1_at11/1110+17215351..17218290expressed protein
LOC_Os10g33360NANA10+17218571..17218870hypothetical protein
LOC_Os10g33370Os.10251.1.S1_at11/1110+17234777..17242065beta-ketoacyl-CoA synthase family protein, putative, expressed
LOC_Os10g33390OsAffx.30651.1.S1_at11/1110+17242773..17244371hypothetical protein
LOC_Os10g33380NANA10+17245001..17246559transposon protein, putative, unclassified
LOC_Os10g33400OsAffx.8028.1.S1_x_at11/1110+17248667..17249263hypothetical protein
LOC_Os10g33410OsAffx.30652.1.S1_x_at11/1110+17251633..17252798hypothetical protein
LOC_Os10g33410Os.54461.1.S1_at11/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.1.S1_at9/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.2.S1_x_at9/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.2.S1_at6/1110+17251633..17252798hypothetical protein
LOC_Os10g33420Os.22652.2.S1_x_at11/1110+17255157..17263307expressed protein
LOC_Os10g33420Os.22652.1.S1_at11/1110+17255157..17263307expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0010025biological_processwax biosynthesis
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0016020cellular_componentmembrane
GO:0008415molecular_functionacyltransferase activity
GO:0009922molecular_functionfatty acid elongase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10251.1.S1_at--1044--1811Chr10:17241470..17241494 (25 bp)
ACGCCGGCGTCTGGAAGGACTGCAT
LOC_Os10g33370
Os.10251.1.S1_at--200--4171Chr10:17241590..17241614 (25 bp)
CCCAATTAATTCCTCGATCGATCTC
LOC_Os10g33370
Os.10251.1.S1_at--490--511Chr10:17241634..17241658 (25 bp)
ATCGATATTGCATGTGCTTGCTTGC
LOC_Os10g33370
Os.10251.1.S1_at--1055--7311Chr10:17241647..17241671 (25 bp)
GTGCTTGCTTGCGTGCATGGATTAA
LOC_Os10g33370
Os.10251.1.S1_at--600--3131Chr10:17241694..17241718 (25 bp)
AATTTTATCGCCATTTGCTGCAGCT
LOC_Os10g33370
Os.10251.1.S1_at--34--4771Chr10:17241710..17241734 (25 bp)
GCTGCAGCTCTGTTGATGATTAGGA
LOC_Os10g33370
Os.10251.1.S1_at--1093--5051Chr10:17241831..17241855 (25 bp)
GCAGCTTGTGATTCCATAATTTTCT
LOC_Os10g33370
Os.10251.1.S1_at--794--171Chr10:17241849..17241873 (25 bp)
ATTTTCTTTTCAGCATGGTGGTAGT
LOC_Os10g33370
Os.10251.1.S1_at--800--7051Chr10:17241917..17241941 (25 bp)
GTAACTCTCTGTATGTTGCTAGCTA
LOC_Os10g33370
Os.10251.1.S1_at--256--10711Chr10:17241932..17241956 (25 bp)
TTGCTAGCTACGAGTGTCGTCCTAG
LOC_Os10g33370
Os.10251.1.S1_at--343--7531Chr10:17241960..17241984 (25 bp)
GTGGCAGGTGTTGTGTCTTTCATTA
LOC_Os10g33370
Target Sequence 
ACGCCGGCGTCTGGAAGGACTGCATCGACCACTACCCTCCCAAGGAGCTCGCCAACCCCTTCATGGAGAAGTACGGCTTC
GTCAAGGACATGATGAACTTGTGATCGATCCATCAAATTCCCCAATTAATTCCTCGATCGATCTCTCAAGAACCAATATA
ATCAATCGATATTGCATGTGCTTGCTTGCGTGCATGGATTAATTAAGCGATCGGTTAGTTAATTAATTTTATCGCCATTT
GCTGCAGCTCTGTTGATGATTAGGATGAACATTATATTTACAGGGAGGGGGAAGAAGAAGTAAGAACAATCAATGAGTTG
AACAAAAAAAAAACTAAGGATTCAATTCATAGGTACATATAGCAGCTTGTGATTCCATAATTTTCTTTTCAGCATGGTGG
TAGTATATGGATTTTATTTATTTATCTTATTTTTTTTGTTGTTGTTTGTAACTCTCTGTATGTTGCTAGCTACGAGTGTC
GTCCTAGCTGGTGGCAGGTGTTGTGTCTTTCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10251.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis