Browse Element(s) Details


OsAffx.18502.1.S1_at

Description tigr:9638.m02925
TID=OsAffx.18502.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative plant disease resistant protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3344011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33410OsAffx.30652.1.S1_x_at11/1110+17251633..17252798hypothetical protein
LOC_Os10g33410Os.54461.1.S1_at11/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.1.S1_at9/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.2.S1_x_at9/1110+17251633..17252798hypothetical protein
LOC_Os10g33410OsAffx.30652.2.S1_at6/1110+17251633..17252798hypothetical protein
LOC_Os10g33420Os.22652.2.S1_x_at11/1110+17255157..17263307expressed protein
LOC_Os10g33420Os.22652.1.S1_at11/1110+17255157..17263307expressed protein
LOC_Os10g33430NANA10+17271928..17272161hypothetical protein
LOC_Os10g33440OsAffx.18502.1.S1_at11/1110+17277212..17283556NB-ARC domain containing protein, expressed
LOC_Os10g33450OsAffx.18503.1.S1_at11/1110+17286836..17287819hypothetical protein
LOC_Os10g33460OsAffx.30655.1.S1_s_at11/1110+17289725..17294252GMC oxidoreductase family protein, expressed
LOC_Os10g33460OsAffx.8024.1.S1_x_at3/1110+17289725..17294252GMC oxidoreductase family protein, expressed
LOC_Os10g33460OsAffx.30655.2.S1_x_at1/1110+17289725..17294252GMC oxidoreductase family protein, expressed
LOC_Os10g33470NANA10+17296222..17299299transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33480Os.47463.1.S1_x_at5/1110+17303343..17307043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33480Os.14491.2.S1_x_at5/1110+17303343..17307043transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g33484NANA10+17307676..17309738hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18502.1.S1_at--817--6271Chr10:17282159..17282183 (25 bp)
GATGTACCGCAAGCTCATGAATCAA
LOC_Os10g33440
OsAffx.18502.1.S1_at--615--8911Chr10:17282551..17282575 (25 bp)
TAGGGAAAGAAGCTACCTCGAATTC
LOC_Os10g33440
OsAffx.18502.1.S1_at--190--9971Chr10:17282564..17282588 (25 bp)
TACCTCGAATTCAGATTGTCCCCAA
LOC_Os10g33440
OsAffx.18502.1.S1_at--802--5211Chr10:17282570..17282594 (25 bp)
GAATTCAGATTGTCCCCAATTTTTT
LOC_Os10g33440
OsAffx.18502.1.S1_at--649--9351Chr10:17282607..17282631 (25 bp)
TCGCTTCTTACATTTGCCCTTGAAT
LOC_Os10g33440
OsAffx.18502.1.S1_at--62--10491Chr10:17282614..17282638 (25 bp)
TTACATTTGCCCTTGAATCCTTCAG
LOC_Os10g33440
OsAffx.18502.1.S1_at--173--5271Chr10:17282628..17282652 (25 bp)
GAATCCTTCAGCGTTGTCGATGAGG
LOC_Os10g33440
OsAffx.18502.1.S1_at--82--2691Chr10:17282721..17282745 (25 bp)
AAGCGGGAGATCATCCGAGTCACCA
LOC_Os10g33440
OsAffx.18502.1.S1_at--652--6091Chr10:17282737..17282761 (25 bp)
GAGTCACCACCAAGGCGATCGTCAA
LOC_Os10g33440
OsAffx.18502.1.S1_at--1000--1711Chr10:17282742..17282763 (22 bp)
ACCACCAAGGCGATCGTCAAGGAGA
LOC_Os10g33440
OsAffx.18502.1.S1_at--513--4073Chr10:17283041..17283065 (25 bp)
CGAGACCAGGAAGCGGAAGAGCCCC
LOC_Os10g33440
Target Sequence 
GATGTACCGCAAGCTCATGAATCAAAACTCAAAAGTAGGGAAAGAAGCTACCTCGAATTCAGATTGTCCCCAATTTTTTT
CCCCATCCTTTTCGCTTCTTACATTTGCCCTTGAATCCTTCAGCGTTGTCGATGAGGAAGTGAAGCCGATCTCGCCGCCG
CCGGAGAAGGAGGAGGAGGAGGCCATCTCGCCGCCGCAACCGCCGAAGCGGGAGATCATCCGAGTCACCACCAAGGCGAT
CGTCAAGGAGAAGGCGAGCGCATTCTCGTCGGTGGGCTCCTCCTCCTCCTCGGGGAAGAGCGGCGCCGGCGGCGGCGCCC
TCAACGCGGCGGCGCTGTTCAGGCGGTTCAACAGCTCAGCCCCCGTGCCGAGAGCGGAGGCCGCGGGAGACGGCGATGGC
GGCGTCCGGCTGGAGATCGAGGACATCGCGGCGGGGGATCGCCGCCGCGAGACCAGGAAGCGGAAGAGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18502.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis