Browse Element(s) Details


OsAffx.8024.1.S1_x_at

Description tigr:9638.m02934
TID=OsAffx.8024.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3353011/11hypothetical protein
LOC_Os10g334603/11GMC oxidoreductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33500OsAffx.30654.1.S1_at11/1110+17322711..17331734hypothetical protein
LOC_Os10g33500OsAffx.8026.1.S1_at2/1110+17322711..17331734hypothetical protein
LOC_Os10g33500Os.20772.1.S1_at1/1110+17322711..17331734hypothetical protein
LOC_Os10g33500OsAffx.20940.1.S1_at1/1110+17322711..17331734hypothetical protein
LOC_Os10g33510OsAffx.18504.1.S1_at11/1110+17334698..17335884hypothetical protein
LOC_Os10g33520OsAffx.30655.2.S1_x_at11/1110+17343989..17346285GMC oxidoreductase family protein
LOC_Os10g33520OsAffx.30655.2.S1_at11/1110+17343989..17346285GMC oxidoreductase family protein
LOC_Os10g33530OsAffx.8024.1.S1_x_at11/1110+17347923..17348652hypothetical protein
LOC_Os10g33540Os.5644.1.S1_at11/1110+17353257..17355571GMC oxidoreductase family protein, expressed
LOC_Os10g33540OsAffx.30655.2.S1_x_at2/1110+17353257..17355571GMC oxidoreductase family protein, expressed
LOC_Os10g33550NANA10+17358554..17359831alcohol oxidase, putative
LOC_Os10g33560NANA10+17365848..17369399retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g33570NANA10+17371838..17376033retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8024.1.S1_x_at--164--912Chr10:17348571..17348595 (25 bp)
AGGCGGGAGCGGTACACGCACGGGC
LOC_Os10g33530
OsAffx.8024.1.S1_x_at--768--5831Chr10:17348427..17348451 (25 bp)
GACCTCGAGCGGTTCTACCTCGCGT
LOC_Os10g33530
OsAffx.8024.1.S1_x_at--1103--1591Chr10:17348366..17348390 (25 bp)
AGCTGATGGTGAACCGGTGCGCGTG
LOC_Os10g33530
OsAffx.8024.1.S1_x_at--339--7551Chr10:17348334..17348358 (25 bp)
GTGGCGCTGGTCACCGTCGTGCTCT
LOC_Os10g33530
OsAffx.8024.1.S1_x_at--442--7711Chr10:17348235..17348259 (25 bp)
GGGTGGCTCCCGTCCGTGCGCAGGT
LOC_Os10g33530
OsAffx.8024.1.S1_x_at--313--7251Chr10:17348224..17348248 (25 bp)
GTCCGTGCGCAGGTTCGCCGACCTG
LOC_Os10g33530
OsAffx.8024.1.S1_x_at--785--8471Chr10:17348151..17348175 (25 bp)
TGGCTGTTCCCGCTCAAGATCACCT
LOC_Os10g33530
OsAffx.8024.1.S1_x_at--1161--9711Chr10:17348138..17348162 (25 bp)
TCAAGATCACCTTCACCGTCATCAA
LOC_Os10g33530
OsAffx.8024.1.S1_x_at--981--9671Chr10:17348132..17348156 (25 bp)
TCACCTTCACCGTCATCAAGATCAT
LOC_Os10g33530
OsAffx.8024.1.S1_x_at--670--372Chr10:17348118..17348142 (25 bp)
ATCAAGATCATCTGCCACTTCGTCT
LOC_Os10g33530
OsAffx.8024.1.S1_x_at--59--9732Chr10:17348117..17348141 (25 bp)
TCAAGATCATCTGCCACTTCGTCTT
LOC_Os10g33530
Target Sequence 
AGGCGGGAGCGGTACACGCACGGGCTGGGGGCCGCGCAGATGGAGGCGCTCCGCGCCATCTGCGGCGCGTTCATCCCGTC
GCTGCCCGAGGCGGCGGCGGCGCTGGCGGAGGCGGACGACGAGGGCCGCGGCGGCGGCGACAAGGACCTCGAGCGGTTCT
ACCTCGCGTCCGCCGCCGACGCCGCCGTCCCCGACGAGGTGGCGGAGCTGATGGTGAACCGGTGCGCGTGGGAGGCGGTG
GCGCTGGTCACCGTCGTGCTCTGGCTGCTCGCCACCAGGGCCGGCACGCTCGCGCTGTGCGGCGCCGCCGCGTGCGTCGC
CTCCTCCGCCGCCGGCGGGTGGCTCCCGTCCGTGCGCAGGTTCGCCGACCTGCCGCCGGAGCGGCGGGAGGCGGCGCTGA
GGCGGTGGAGCTCGGCGCGGTGGCTGTTCCCGCTCAAGATCACCTTCACCGTCATCAAGATCATCTGCCACTTCGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8024.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis